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dbVar

Database of genomic structural variation

nsv889977

Organism: Homo sapiens

Study:nstd71 (Xu et al. 2011)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:3
Validation:Not tested
Clinical Assertions: No
Region Size:17,740

Publication(s):Xu et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 454 SVs from 47 studies. See in: genome view

Remapped(Score: Perfect):4,944,916-4,962,655

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv889977	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000008.11	Chr8	4,944,916	4,947,246	4,960,291	4,962,655
nsv889977	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000008.10	Chr8	4,802,438	4,804,768	4,817,813	4,820,177
nsv889977	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000008.9	Chr8	4,789,846	4,792,176	4,805,221	4,807,585

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1532674	copy number loss	MS10802	SNP array	SNP genotyping analysis	73
nssv1535575	copy number loss	MS12266	SNP array	SNP genotyping analysis	58
nssv1550393	copy number gain	MS18431	SNP array	SNP genotyping analysis	122

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1532674	Remapped	Perfect	NC_000008.11:g.(49 44916_4947246)_(49 60291_4962655)del	GRCh38.p12	First Pass	NC_000008.11	Chr8	4,944,916	4,947,246	4,960,291	4,962,655
nssv1535575	Remapped	Perfect	NC_000008.11:g.(49 44916_4947246)_(49 60291_4962655)del	GRCh38.p12	First Pass	NC_000008.11	Chr8	4,944,916	4,947,246	4,960,291	4,962,655
nssv1550393	Remapped	Perfect	NC_000008.11:g.(49 44916_4947246)_(49 60291_4962655)dup	GRCh38.p12	First Pass	NC_000008.11	Chr8	4,944,916	4,947,246	4,960,291	4,962,655
nssv1532674	Remapped	Perfect	NC_000008.10:g.(48 02438_4804768)_(48 17813_4820177)del	GRCh37.p13	First Pass	NC_000008.10	Chr8	4,802,438	4,804,768	4,817,813	4,820,177
nssv1535575	Remapped	Perfect	NC_000008.10:g.(48 02438_4804768)_(48 17813_4820177)del	GRCh37.p13	First Pass	NC_000008.10	Chr8	4,802,438	4,804,768	4,817,813	4,820,177
nssv1550393	Remapped	Perfect	NC_000008.10:g.(48 02438_4804768)_(48 17813_4820177)dup	GRCh37.p13	First Pass	NC_000008.10	Chr8	4,802,438	4,804,768	4,817,813	4,820,177
nssv1532674	Submitted genomic		NC_000008.9:g.(478 9846_4792176)_(480 5221_4807585)del	NCBI36 (hg18)		NC_000008.9	Chr8	4,789,846	4,792,176	4,805,221	4,807,585
nssv1535575	Submitted genomic		NC_000008.9:g.(478 9846_4792176)_(480 5221_4807585)del	NCBI36 (hg18)		NC_000008.9	Chr8	4,789,846	4,792,176	4,805,221	4,807,585
nssv1550393	Submitted genomic		NC_000008.9:g.(478 9846_4792176)_(480 5221_4807585)dup	NCBI36 (hg18)		NC_000008.9	Chr8	4,789,846	4,792,176	4,805,221	4,807,585

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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