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dbVar

Database of genomic structural variation

nsv890146

Organism: Homo sapiens

Study:nstd71 (Xu et al. 2011)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:3
Validation:Not tested
Clinical Assertions: No
Region Size:518,486

Publication(s):Xu et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 3517 SVs from 105 studies. See in: genome view

Remapped(Score: Pass):7,368,538-7,887,023

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv890146	Remapped	Pass	GRCh38.p12	Primary Assembly	First Pass	NC_000008.11	Chr8	7,368,538	7,368,538	7,887,023	7,887,023
nsv890146	Remapped	Pass	GRCh37.p13	Primary Assembly	First Pass	NC_000008.10	Chr8	7,226,060	7,226,060	7,744,545	7,744,545
nsv890146	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000008.9	Chr8	7,213,470	7,230,125	7,771,363	7,781,955

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1536778	copy number gain	MS12947	SNP array	SNP genotyping analysis	22
nssv1537241	copy number gain	MS13131	SNP array	SNP genotyping analysis	7
nssv1558454	copy number gain	MS23258	SNP array	SNP genotyping analysis	14

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1536778	Remapped	Pass	NC_000008.11:g.(73 68538_7368538)_(78 87023_7887023)dup	GRCh38.p12	First Pass	NC_000008.11	Chr8	7,368,538	7,368,538	7,887,023	7,887,023
nssv1537241	Remapped	Pass	NC_000008.11:g.(73 68538_7368538)_(78 87023_7887023)dup	GRCh38.p12	First Pass	NC_000008.11	Chr8	7,368,538	7,368,538	7,887,023	7,887,023
nssv1558454	Remapped	Pass	NC_000008.11:g.(73 68538_7368538)_(78 87023_7887023)dup	GRCh38.p12	First Pass	NC_000008.11	Chr8	7,368,538	7,368,538	7,887,023	7,887,023
nssv1536778	Remapped	Pass	NC_000008.10:g.(72 26060_7226060)_(77 44545_7744545)dup	GRCh37.p13	First Pass	NC_000008.10	Chr8	7,226,060	7,226,060	7,744,545	7,744,545
nssv1537241	Remapped	Pass	NC_000008.10:g.(72 26060_7226060)_(77 44545_7744545)dup	GRCh37.p13	First Pass	NC_000008.10	Chr8	7,226,060	7,226,060	7,744,545	7,744,545
nssv1558454	Remapped	Pass	NC_000008.10:g.(72 26060_7226060)_(77 44545_7744545)dup	GRCh37.p13	First Pass	NC_000008.10	Chr8	7,226,060	7,226,060	7,744,545	7,744,545
nssv1536778	Submitted genomic		NC_000008.9:g.(721 3470_7230125)_(777 1363_7781955)dup	NCBI36 (hg18)		NC_000008.9	Chr8	7,213,470	7,230,125	7,771,363	7,781,955
nssv1537241	Submitted genomic		NC_000008.9:g.(721 3470_7230125)_(777 1363_7781955)dup	NCBI36 (hg18)		NC_000008.9	Chr8	7,213,470	7,230,125	7,771,363	7,781,955
nssv1558454	Submitted genomic		NC_000008.9:g.(721 3470_7230125)_(777 1363_7781955)dup	NCBI36 (hg18)		NC_000008.9	Chr8	7,213,470	7,230,125	7,771,363	7,781,955

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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