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dbVar

Database of genomic structural variation

nsv890215

Organism: Homo sapiens

Study:nstd71 (Xu et al. 2011)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:3
Validation:Not tested
Clinical Assertions: No
Region Size:506,263

Publication(s):Xu et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 3455 SVs from 106 studies. See in: genome view

Remapped(Score: Pass):7,438,892-7,945,154

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv890215	Remapped	Pass	GRCh38.p12	Primary Assembly	First Pass	NC_000008.11	Chr8	7,438,892	7,438,892	7,945,154	7,945,154
nsv890215	Remapped	Pass	GRCh37.p13	Primary Assembly	First Pass	NC_000008.10	Chr8	7,296,414	7,296,414	7,802,676	7,802,676
nsv890215	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000008.9	Chr8	7,283,824	7,294,000	7,830,417	7,840,086

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1521267	copy number gain	SP52320	SNP array	SNP genotyping analysis	9
nssv1590237	copy number gain	IS38474	SNP array	SNP genotyping analysis	9
nssv1596642	copy number gain	IS40582	SNP array	SNP genotyping analysis	14

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1521267	Remapped	Pass	NC_000008.11:g.(74 38892_7438892)_(79 45154_7945154)dup	GRCh38.p12	First Pass	NC_000008.11	Chr8	7,438,892	7,438,892	7,945,154	7,945,154
nssv1590237	Remapped	Pass	NC_000008.11:g.(74 38892_7438892)_(79 45154_7945154)dup	GRCh38.p12	First Pass	NC_000008.11	Chr8	7,438,892	7,438,892	7,945,154	7,945,154
nssv1596642	Remapped	Pass	NC_000008.11:g.(74 38892_7438892)_(79 45154_7945154)dup	GRCh38.p12	First Pass	NC_000008.11	Chr8	7,438,892	7,438,892	7,945,154	7,945,154
nssv1521267	Remapped	Pass	NC_000008.10:g.(72 96414_7296414)_(78 02676_7802676)dup	GRCh37.p13	First Pass	NC_000008.10	Chr8	7,296,414	7,296,414	7,802,676	7,802,676
nssv1590237	Remapped	Pass	NC_000008.10:g.(72 96414_7296414)_(78 02676_7802676)dup	GRCh37.p13	First Pass	NC_000008.10	Chr8	7,296,414	7,296,414	7,802,676	7,802,676
nssv1596642	Remapped	Pass	NC_000008.10:g.(72 96414_7296414)_(78 02676_7802676)dup	GRCh37.p13	First Pass	NC_000008.10	Chr8	7,296,414	7,296,414	7,802,676	7,802,676
nssv1521267	Submitted genomic		NC_000008.9:g.(728 3824_7294000)_(783 0417_7840086)dup	NCBI36 (hg18)		NC_000008.9	Chr8	7,283,824	7,294,000	7,830,417	7,840,086
nssv1590237	Submitted genomic		NC_000008.9:g.(728 3824_7294000)_(783 0417_7840086)dup	NCBI36 (hg18)		NC_000008.9	Chr8	7,283,824	7,294,000	7,830,417	7,840,086
nssv1596642	Submitted genomic		NC_000008.9:g.(728 3824_7294000)_(783 0417_7840086)dup	NCBI36 (hg18)		NC_000008.9	Chr8	7,283,824	7,294,000	7,830,417	7,840,086

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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