nsv890285
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:9
- Validation:Not tested
- Clinical Assertions: No
- Region Size:156,642
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 2169 SVs from 99 studies. See in: genome view
Overlapping variant regions from other studies: 572 SVs from 43 studies. See in: genome view
Overlapping variant regions from other studies: 2169 SVs from 99 studies. See in: genome view
Overlapping variant regions from other studies: 1607 SVs from 30 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv890285 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000008.11 | Chr8 | 7,788,513 | 7,797,538 | 7,935,485 | 7,945,154 |
| nsv890285 | Remapped | Pass | GRCh38.p12 | PATCHES | Second Pass | NW_018654717.1 | Chr8|NW_01 8654717.1 | 5,385,730 | 5,385,730 | 5,513,617 | - |
| nsv890285 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000008.10 | Chr8 | 7,646,035 | 7,655,060 | 7,793,007 | 7,802,676 |
| nsv890285 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000008.9 | Chr8 | 7,683,445 | 7,692,470 | 7,830,417 | 7,840,086 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1503618 | copy number gain | SP52081 | SNP array | SNP genotyping analysis | 15 |
| nssv1520217 | copy number gain | SP50749 | SNP array | SNP genotyping analysis | 9 |
| nssv1521758 | copy number gain | SP52571 | SNP array | SNP genotyping analysis | 9 |
| nssv1522063 | copy number gain | SP52713 | SNP array | SNP genotyping analysis | 11 |
| nssv1547820 | copy number gain | MS17572 | SNP array | SNP genotyping analysis | 12 |
| nssv1554052 | copy number gain | MS20563 | SNP array | SNP genotyping analysis | 9 |
| nssv1559698 | copy number gain | MS24098 | SNP array | SNP genotyping analysis | 15 |
| nssv1564534 | copy number gain | IS30228 | SNP array | SNP genotyping analysis | 17 |
| nssv1588792 | copy number gain | IS38246 | SNP array | SNP genotyping analysis | 9 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1503618 | Remapped | Pass | NW_018654717.1:g.( 5385730_5385730)_( 5513617_?)dup | GRCh38.p12 | Second Pass | NW_018654717.1 | Chr8|NW_01 8654717.1 | 5,385,730 | 5,385,730 | 5,513,617 | - |
| nssv1520217 | Remapped | Pass | NW_018654717.1:g.( 5385730_5385730)_( 5513617_?)dup | GRCh38.p12 | Second Pass | NW_018654717.1 | Chr8|NW_01 8654717.1 | 5,385,730 | 5,385,730 | 5,513,617 | - |
| nssv1521758 | Remapped | Pass | NW_018654717.1:g.( 5385730_5385730)_( 5513617_?)dup | GRCh38.p12 | Second Pass | NW_018654717.1 | Chr8|NW_01 8654717.1 | 5,385,730 | 5,385,730 | 5,513,617 | - |
| nssv1522063 | Remapped | Pass | NW_018654717.1:g.( 5385730_5385730)_( 5513617_?)dup | GRCh38.p12 | Second Pass | NW_018654717.1 | Chr8|NW_01 8654717.1 | 5,385,730 | 5,385,730 | 5,513,617 | - |
| nssv1547820 | Remapped | Pass | NW_018654717.1:g.( 5385730_5385730)_( 5513617_?)dup | GRCh38.p12 | Second Pass | NW_018654717.1 | Chr8|NW_01 8654717.1 | 5,385,730 | 5,385,730 | 5,513,617 | - |
| nssv1554052 | Remapped | Pass | NW_018654717.1:g.( 5385730_5385730)_( 5513617_?)dup | GRCh38.p12 | Second Pass | NW_018654717.1 | Chr8|NW_01 8654717.1 | 5,385,730 | 5,385,730 | 5,513,617 | - |
| nssv1559698 | Remapped | Pass | NW_018654717.1:g.( 5385730_5385730)_( 5513617_?)dup | GRCh38.p12 | Second Pass | NW_018654717.1 | Chr8|NW_01 8654717.1 | 5,385,730 | 5,385,730 | 5,513,617 | - |
| nssv1564534 | Remapped | Pass | NW_018654717.1:g.( 5385730_5385730)_( 5513617_?)dup | GRCh38.p12 | Second Pass | NW_018654717.1 | Chr8|NW_01 8654717.1 | 5,385,730 | 5,385,730 | 5,513,617 | - |
| nssv1588792 | Remapped | Pass | NW_018654717.1:g.( 5385730_5385730)_( 5513617_?)dup | GRCh38.p12 | Second Pass | NW_018654717.1 | Chr8|NW_01 8654717.1 | 5,385,730 | 5,385,730 | 5,513,617 | - |
| nssv1503618 | Remapped | Perfect | NC_000008.11:g.(77 88513_7797538)_(79 35485_7945154)dup | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 7,788,513 | 7,797,538 | 7,935,485 | 7,945,154 |
| nssv1520217 | Remapped | Perfect | NC_000008.11:g.(77 88513_7797538)_(79 35485_7945154)dup | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 7,788,513 | 7,797,538 | 7,935,485 | 7,945,154 |
| nssv1521758 | Remapped | Perfect | NC_000008.11:g.(77 88513_7797538)_(79 35485_7945154)dup | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 7,788,513 | 7,797,538 | 7,935,485 | 7,945,154 |
| nssv1522063 | Remapped | Perfect | NC_000008.11:g.(77 88513_7797538)_(79 35485_7945154)dup | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 7,788,513 | 7,797,538 | 7,935,485 | 7,945,154 |
| nssv1547820 | Remapped | Perfect | NC_000008.11:g.(77 88513_7797538)_(79 35485_7945154)dup | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 7,788,513 | 7,797,538 | 7,935,485 | 7,945,154 |
| nssv1554052 | Remapped | Perfect | NC_000008.11:g.(77 88513_7797538)_(79 35485_7945154)dup | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 7,788,513 | 7,797,538 | 7,935,485 | 7,945,154 |
| nssv1559698 | Remapped | Perfect | NC_000008.11:g.(77 88513_7797538)_(79 35485_7945154)dup | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 7,788,513 | 7,797,538 | 7,935,485 | 7,945,154 |
| nssv1564534 | Remapped | Perfect | NC_000008.11:g.(77 88513_7797538)_(79 35485_7945154)dup | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 7,788,513 | 7,797,538 | 7,935,485 | 7,945,154 |
| nssv1588792 | Remapped | Perfect | NC_000008.11:g.(77 88513_7797538)_(79 35485_7945154)dup | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 7,788,513 | 7,797,538 | 7,935,485 | 7,945,154 |
| nssv1503618 | Remapped | Perfect | NC_000008.10:g.(76 46035_7655060)_(77 93007_7802676)dup | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 7,646,035 | 7,655,060 | 7,793,007 | 7,802,676 |
| nssv1520217 | Remapped | Perfect | NC_000008.10:g.(76 46035_7655060)_(77 93007_7802676)dup | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 7,646,035 | 7,655,060 | 7,793,007 | 7,802,676 |
| nssv1521758 | Remapped | Perfect | NC_000008.10:g.(76 46035_7655060)_(77 93007_7802676)dup | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 7,646,035 | 7,655,060 | 7,793,007 | 7,802,676 |
| nssv1522063 | Remapped | Perfect | NC_000008.10:g.(76 46035_7655060)_(77 93007_7802676)dup | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 7,646,035 | 7,655,060 | 7,793,007 | 7,802,676 |
| nssv1547820 | Remapped | Perfect | NC_000008.10:g.(76 46035_7655060)_(77 93007_7802676)dup | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 7,646,035 | 7,655,060 | 7,793,007 | 7,802,676 |
| nssv1554052 | Remapped | Perfect | NC_000008.10:g.(76 46035_7655060)_(77 93007_7802676)dup | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 7,646,035 | 7,655,060 | 7,793,007 | 7,802,676 |
| nssv1559698 | Remapped | Perfect | NC_000008.10:g.(76 46035_7655060)_(77 93007_7802676)dup | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 7,646,035 | 7,655,060 | 7,793,007 | 7,802,676 |
| nssv1564534 | Remapped | Perfect | NC_000008.10:g.(76 46035_7655060)_(77 93007_7802676)dup | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 7,646,035 | 7,655,060 | 7,793,007 | 7,802,676 |
| nssv1588792 | Remapped | Perfect | NC_000008.10:g.(76 46035_7655060)_(77 93007_7802676)dup | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 7,646,035 | 7,655,060 | 7,793,007 | 7,802,676 |
| nssv1503618 | Submitted genomic | NC_000008.9:g.(768 3445_7692470)_(783 0417_7840086)dup | NCBI36 (hg18) | NC_000008.9 | Chr8 | 7,683,445 | 7,692,470 | 7,830,417 | 7,840,086 | ||
| nssv1520217 | Submitted genomic | NC_000008.9:g.(768 3445_7692470)_(783 0417_7840086)dup | NCBI36 (hg18) | NC_000008.9 | Chr8 | 7,683,445 | 7,692,470 | 7,830,417 | 7,840,086 | ||
| nssv1521758 | Submitted genomic | NC_000008.9:g.(768 3445_7692470)_(783 0417_7840086)dup | NCBI36 (hg18) | NC_000008.9 | Chr8 | 7,683,445 | 7,692,470 | 7,830,417 | 7,840,086 | ||
| nssv1522063 | Submitted genomic | NC_000008.9:g.(768 3445_7692470)_(783 0417_7840086)dup | NCBI36 (hg18) | NC_000008.9 | Chr8 | 7,683,445 | 7,692,470 | 7,830,417 | 7,840,086 | ||
| nssv1547820 | Submitted genomic | NC_000008.9:g.(768 3445_7692470)_(783 0417_7840086)dup | NCBI36 (hg18) | NC_000008.9 | Chr8 | 7,683,445 | 7,692,470 | 7,830,417 | 7,840,086 | ||
| nssv1554052 | Submitted genomic | NC_000008.9:g.(768 3445_7692470)_(783 0417_7840086)dup | NCBI36 (hg18) | NC_000008.9 | Chr8 | 7,683,445 | 7,692,470 | 7,830,417 | 7,840,086 | ||
| nssv1559698 | Submitted genomic | NC_000008.9:g.(768 3445_7692470)_(783 0417_7840086)dup | NCBI36 (hg18) | NC_000008.9 | Chr8 | 7,683,445 | 7,692,470 | 7,830,417 | 7,840,086 | ||
| nssv1564534 | Submitted genomic | NC_000008.9:g.(768 3445_7692470)_(783 0417_7840086)dup | NCBI36 (hg18) | NC_000008.9 | Chr8 | 7,683,445 | 7,692,470 | 7,830,417 | 7,840,086 | ||
| nssv1588792 | Submitted genomic | NC_000008.9:g.(768 3445_7692470)_(783 0417_7840086)dup | NCBI36 (hg18) | NC_000008.9 | Chr8 | 7,683,445 | 7,692,470 | 7,830,417 | 7,840,086 |