nsv890340
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:6
- Validation:Not tested
- Clinical Assertions: No
- Region Size:91,986
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 801 SVs from 84 studies. See in: genome view
Overlapping variant regions from other studies: 451 SVs from 62 studies. See in: genome view
Overlapping variant regions from other studies: 801 SVs from 84 studies. See in: genome view
Overlapping variant regions from other studies: 298 SVs from 22 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv890340 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000008.11 | Chr8 | 9,171,903 | 9,178,319 | 9,255,062 | 9,263,888 |
| nsv890340 | Remapped | Good | GRCh38.p12 | PATCHES | Second Pass | NW_018654717.1 | Chr8|NW_01 8654717.1 | 4,087,774 | 4,087,774 | 4,179,678 | 4,179,678 |
| nsv890340 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000008.10 | Chr8 | 9,029,413 | 9,035,829 | 9,112,572 | 9,121,398 |
| nsv890340 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000008.9 | Chr8 | 9,066,823 | 9,073,239 | 9,149,982 | 9,158,808 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1567960 | copy number loss | IS31179 | SNP array | SNP genotyping analysis | 81 |
| nssv1570007 | copy number loss | IS31765 | SNP array | SNP genotyping analysis | 26 |
| nssv1574850 | copy number loss | IS33651 | SNP array | SNP genotyping analysis | 10 |
| nssv1577256 | copy number loss | IS34400 | SNP array | SNP genotyping analysis | 16 |
| nssv1586701 | copy number loss | IS37960 | SNP array | SNP genotyping analysis | 11 |
| nssv1597747 | copy number loss | IS41045 | SNP array | SNP genotyping analysis | 9 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1567960 | Remapped | Good | NW_018654717.1:g.( 4087774_4087774)_( 4179678_4179678)de l | GRCh38.p12 | Second Pass | NW_018654717.1 | Chr8|NW_01 8654717.1 | 4,087,774 | 4,087,774 | 4,179,678 | 4,179,678 |
| nssv1570007 | Remapped | Good | NW_018654717.1:g.( 4087774_4087774)_( 4179678_4179678)de l | GRCh38.p12 | Second Pass | NW_018654717.1 | Chr8|NW_01 8654717.1 | 4,087,774 | 4,087,774 | 4,179,678 | 4,179,678 |
| nssv1574850 | Remapped | Good | NW_018654717.1:g.( 4087774_4087774)_( 4179678_4179678)de l | GRCh38.p12 | Second Pass | NW_018654717.1 | Chr8|NW_01 8654717.1 | 4,087,774 | 4,087,774 | 4,179,678 | 4,179,678 |
| nssv1577256 | Remapped | Good | NW_018654717.1:g.( 4087774_4087774)_( 4179678_4179678)de l | GRCh38.p12 | Second Pass | NW_018654717.1 | Chr8|NW_01 8654717.1 | 4,087,774 | 4,087,774 | 4,179,678 | 4,179,678 |
| nssv1586701 | Remapped | Good | NW_018654717.1:g.( 4087774_4087774)_( 4179678_4179678)de l | GRCh38.p12 | Second Pass | NW_018654717.1 | Chr8|NW_01 8654717.1 | 4,087,774 | 4,087,774 | 4,179,678 | 4,179,678 |
| nssv1597747 | Remapped | Good | NW_018654717.1:g.( 4087774_4087774)_( 4179678_4179678)de l | GRCh38.p12 | Second Pass | NW_018654717.1 | Chr8|NW_01 8654717.1 | 4,087,774 | 4,087,774 | 4,179,678 | 4,179,678 |
| nssv1567960 | Remapped | Perfect | NC_000008.11:g.(91 71903_9178319)_(92 55062_9263888)del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 9,171,903 | 9,178,319 | 9,255,062 | 9,263,888 |
| nssv1570007 | Remapped | Perfect | NC_000008.11:g.(91 71903_9178319)_(92 55062_9263888)del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 9,171,903 | 9,178,319 | 9,255,062 | 9,263,888 |
| nssv1574850 | Remapped | Perfect | NC_000008.11:g.(91 71903_9178319)_(92 55062_9263888)del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 9,171,903 | 9,178,319 | 9,255,062 | 9,263,888 |
| nssv1577256 | Remapped | Perfect | NC_000008.11:g.(91 71903_9178319)_(92 55062_9263888)del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 9,171,903 | 9,178,319 | 9,255,062 | 9,263,888 |
| nssv1586701 | Remapped | Perfect | NC_000008.11:g.(91 71903_9178319)_(92 55062_9263888)del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 9,171,903 | 9,178,319 | 9,255,062 | 9,263,888 |
| nssv1597747 | Remapped | Perfect | NC_000008.11:g.(91 71903_9178319)_(92 55062_9263888)del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 9,171,903 | 9,178,319 | 9,255,062 | 9,263,888 |
| nssv1567960 | Remapped | Perfect | NC_000008.10:g.(90 29413_9035829)_(91 12572_9121398)del | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 9,029,413 | 9,035,829 | 9,112,572 | 9,121,398 |
| nssv1570007 | Remapped | Perfect | NC_000008.10:g.(90 29413_9035829)_(91 12572_9121398)del | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 9,029,413 | 9,035,829 | 9,112,572 | 9,121,398 |
| nssv1574850 | Remapped | Perfect | NC_000008.10:g.(90 29413_9035829)_(91 12572_9121398)del | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 9,029,413 | 9,035,829 | 9,112,572 | 9,121,398 |
| nssv1577256 | Remapped | Perfect | NC_000008.10:g.(90 29413_9035829)_(91 12572_9121398)del | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 9,029,413 | 9,035,829 | 9,112,572 | 9,121,398 |
| nssv1586701 | Remapped | Perfect | NC_000008.10:g.(90 29413_9035829)_(91 12572_9121398)del | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 9,029,413 | 9,035,829 | 9,112,572 | 9,121,398 |
| nssv1597747 | Remapped | Perfect | NC_000008.10:g.(90 29413_9035829)_(91 12572_9121398)del | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 9,029,413 | 9,035,829 | 9,112,572 | 9,121,398 |
| nssv1567960 | Submitted genomic | NC_000008.9:g.(906 6823_9073239)_(914 9982_9158808)del | NCBI36 (hg18) | NC_000008.9 | Chr8 | 9,066,823 | 9,073,239 | 9,149,982 | 9,158,808 | ||
| nssv1570007 | Submitted genomic | NC_000008.9:g.(906 6823_9073239)_(914 9982_9158808)del | NCBI36 (hg18) | NC_000008.9 | Chr8 | 9,066,823 | 9,073,239 | 9,149,982 | 9,158,808 | ||
| nssv1574850 | Submitted genomic | NC_000008.9:g.(906 6823_9073239)_(914 9982_9158808)del | NCBI36 (hg18) | NC_000008.9 | Chr8 | 9,066,823 | 9,073,239 | 9,149,982 | 9,158,808 | ||
| nssv1577256 | Submitted genomic | NC_000008.9:g.(906 6823_9073239)_(914 9982_9158808)del | NCBI36 (hg18) | NC_000008.9 | Chr8 | 9,066,823 | 9,073,239 | 9,149,982 | 9,158,808 | ||
| nssv1586701 | Submitted genomic | NC_000008.9:g.(906 6823_9073239)_(914 9982_9158808)del | NCBI36 (hg18) | NC_000008.9 | Chr8 | 9,066,823 | 9,073,239 | 9,149,982 | 9,158,808 | ||
| nssv1597747 | Submitted genomic | NC_000008.9:g.(906 6823_9073239)_(914 9982_9158808)del | NCBI36 (hg18) | NC_000008.9 | Chr8 | 9,066,823 | 9,073,239 | 9,149,982 | 9,158,808 |