nsv890615
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:192,186
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 947 SVs from 71 studies. See in: genome view
Overlapping variant regions from other studies: 949 SVs from 71 studies. See in: genome view
Overlapping variant regions from other studies: 314 SVs from 22 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv890615 | Remapped | Good | GRCh38.p12 | Primary Assembly | First Pass | NC_000008.11 | Chr8 | 19,132,225 | 19,132,225 | 19,324,410 | 19,324,410 |
| nsv890615 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000008.10 | Chr8 | 18,989,735 | 18,997,571 | 19,177,772 | 19,181,921 |
| nsv890615 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000008.9 | Chr8 | 19,034,015 | 19,041,851 | 19,222,052 | 19,226,201 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1596159 | copy number gain | IS40416 | SNP array | SNP genotyping analysis | 19 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1596159 | Remapped | Good | NC_000008.11:g.(19 132225_19132225)_( 19324410_19324410) dup | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 19,132,225 | 19,132,225 | 19,324,410 | 19,324,410 |
| nssv1596159 | Remapped | Perfect | NC_000008.10:g.(18 989735_18997571)_( 19177772_19181921) dup | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 18,989,735 | 18,997,571 | 19,177,772 | 19,181,921 |
| nssv1596159 | Submitted genomic | NC_000008.9:g.(190 34015_19041851)_(1 9222052_19226201)d up | NCBI36 (hg18) | NC_000008.9 | Chr8 | 19,034,015 | 19,041,851 | 19,222,052 | 19,226,201 |