nsv890816
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:21
- Validation:Not tested
- Clinical Assertions: No
- Region Size:76,214
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1650 SVs from 90 studies. See in: genome view
Overlapping variant regions from other studies: 1650 SVs from 90 studies. See in: genome view
Overlapping variant regions from other studies: 995 SVs from 33 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv890816 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000008.11 | Chr8 | 39,444,668 | 39,451,651 | 39,499,982 | 39,520,881 |
| nsv890816 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000008.10 | Chr8 | 39,302,187 | 39,309,170 | 39,357,501 | 39,378,400 |
| nsv890816 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000008.9 | Chr8 | 39,421,344 | 39,428,327 | 39,476,658 | 39,497,557 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1525914 | copy number loss | SP56889 | SNP array | SNP genotyping analysis | 10 |
| nssv1530061 | copy number gain | MS10184 | SNP array | SNP genotyping analysis | 13 |
| nssv1536637 | copy number gain | MS12863 | SNP array | SNP genotyping analysis | 15 |
| nssv1538970 | copy number loss | MS13916 | SNP array | SNP genotyping analysis | 17 |
| nssv1540084 | copy number gain | MS14681 | SNP array | SNP genotyping analysis | 16 |
| nssv1541269 | copy number loss | MS15218 | SNP array | SNP genotyping analysis | 11 |
| nssv1550318 | copy number gain | MS18406 | SNP array | SNP genotyping analysis | 19 |
| nssv1551521 | copy number loss | MS18917 | SNP array | SNP genotyping analysis | 10 |
| nssv1554182 | copy number loss | MS20632 | SNP array | SNP genotyping analysis | 11 |
| nssv1557725 | copy number loss | MS22848 | SNP array | SNP genotyping analysis | 8 |
| nssv1557840 | copy number loss | MS22930 | SNP array | SNP genotyping analysis | 12 |
| nssv1561641 | copy number gain | MS25163 | SNP array | SNP genotyping analysis | 9 |
| nssv1579068 | copy number gain | IS35011 | SNP array | SNP genotyping analysis | 8 |
| nssv1585656 | copy number gain | IS37605 | SNP array | SNP genotyping analysis | 11 |
| nssv1586573 | copy number gain | IS37866 | SNP array | SNP genotyping analysis | 10 |
| nssv1589191 | copy number gain | IS38309 | SNP array | SNP genotyping analysis | 16 |
| nssv1589712 | copy number gain | IS38400 | SNP array | SNP genotyping analysis | 16 |
| nssv1599234 | copy number loss | IS41483 | SNP array | SNP genotyping analysis | 10 |
| nssv1599591 | copy number gain | IS41703 | SNP array | SNP genotyping analysis | 13 |
| nssv1599834 | copy number loss | IS41801 | SNP array | SNP genotyping analysis | 14 |
| nssv1600202 | copy number loss | IS41859 | SNP array | SNP genotyping analysis | 12 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1525914 | Remapped | Perfect | NC_000008.11:g.(39 444668_39451651)_( 39499982_39520881) del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 39,444,668 | 39,451,651 | 39,499,982 | 39,520,881 |
| nssv1530061 | Remapped | Perfect | NC_000008.11:g.(39 444668_39451651)_( 39499982_39520881) dup | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 39,444,668 | 39,451,651 | 39,499,982 | 39,520,881 |
| nssv1536637 | Remapped | Perfect | NC_000008.11:g.(39 444668_39451651)_( 39499982_39520881) dup | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 39,444,668 | 39,451,651 | 39,499,982 | 39,520,881 |
| nssv1538970 | Remapped | Perfect | NC_000008.11:g.(39 444668_39451651)_( 39499982_39520881) del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 39,444,668 | 39,451,651 | 39,499,982 | 39,520,881 |
| nssv1540084 | Remapped | Perfect | NC_000008.11:g.(39 444668_39451651)_( 39499982_39520881) dup | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 39,444,668 | 39,451,651 | 39,499,982 | 39,520,881 |
| nssv1541269 | Remapped | Perfect | NC_000008.11:g.(39 444668_39451651)_( 39499982_39520881) del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 39,444,668 | 39,451,651 | 39,499,982 | 39,520,881 |
| nssv1550318 | Remapped | Perfect | NC_000008.11:g.(39 444668_39451651)_( 39499982_39520881) dup | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 39,444,668 | 39,451,651 | 39,499,982 | 39,520,881 |
| nssv1551521 | Remapped | Perfect | NC_000008.11:g.(39 444668_39451651)_( 39499982_39520881) del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 39,444,668 | 39,451,651 | 39,499,982 | 39,520,881 |
| nssv1554182 | Remapped | Perfect | NC_000008.11:g.(39 444668_39451651)_( 39499982_39520881) del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 39,444,668 | 39,451,651 | 39,499,982 | 39,520,881 |
| nssv1557725 | Remapped | Perfect | NC_000008.11:g.(39 444668_39451651)_( 39499982_39520881) del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 39,444,668 | 39,451,651 | 39,499,982 | 39,520,881 |
| nssv1557840 | Remapped | Perfect | NC_000008.11:g.(39 444668_39451651)_( 39499982_39520881) del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 39,444,668 | 39,451,651 | 39,499,982 | 39,520,881 |
| nssv1561641 | Remapped | Perfect | NC_000008.11:g.(39 444668_39451651)_( 39499982_39520881) dup | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 39,444,668 | 39,451,651 | 39,499,982 | 39,520,881 |
| nssv1579068 | Remapped | Perfect | NC_000008.11:g.(39 444668_39451651)_( 39499982_39520881) dup | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 39,444,668 | 39,451,651 | 39,499,982 | 39,520,881 |
| nssv1585656 | Remapped | Perfect | NC_000008.11:g.(39 444668_39451651)_( 39499982_39520881) dup | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 39,444,668 | 39,451,651 | 39,499,982 | 39,520,881 |
| nssv1586573 | Remapped | Perfect | NC_000008.11:g.(39 444668_39451651)_( 39499982_39520881) dup | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 39,444,668 | 39,451,651 | 39,499,982 | 39,520,881 |
| nssv1589191 | Remapped | Perfect | NC_000008.11:g.(39 444668_39451651)_( 39499982_39520881) dup | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 39,444,668 | 39,451,651 | 39,499,982 | 39,520,881 |
| nssv1589712 | Remapped | Perfect | NC_000008.11:g.(39 444668_39451651)_( 39499982_39520881) dup | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 39,444,668 | 39,451,651 | 39,499,982 | 39,520,881 |
| nssv1599234 | Remapped | Perfect | NC_000008.11:g.(39 444668_39451651)_( 39499982_39520881) del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 39,444,668 | 39,451,651 | 39,499,982 | 39,520,881 |
| nssv1599591 | Remapped | Perfect | NC_000008.11:g.(39 444668_39451651)_( 39499982_39520881) dup | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 39,444,668 | 39,451,651 | 39,499,982 | 39,520,881 |
| nssv1599834 | Remapped | Perfect | NC_000008.11:g.(39 444668_39451651)_( 39499982_39520881) del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 39,444,668 | 39,451,651 | 39,499,982 | 39,520,881 |
| nssv1600202 | Remapped | Perfect | NC_000008.11:g.(39 444668_39451651)_( 39499982_39520881) del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 39,444,668 | 39,451,651 | 39,499,982 | 39,520,881 |
| nssv1525914 | Remapped | Perfect | NC_000008.10:g.(39 302187_39309170)_( 39357501_39378400) del | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 39,302,187 | 39,309,170 | 39,357,501 | 39,378,400 |
| nssv1530061 | Remapped | Perfect | NC_000008.10:g.(39 302187_39309170)_( 39357501_39378400) dup | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 39,302,187 | 39,309,170 | 39,357,501 | 39,378,400 |
| nssv1536637 | Remapped | Perfect | NC_000008.10:g.(39 302187_39309170)_( 39357501_39378400) dup | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 39,302,187 | 39,309,170 | 39,357,501 | 39,378,400 |
| nssv1538970 | Remapped | Perfect | NC_000008.10:g.(39 302187_39309170)_( 39357501_39378400) del | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 39,302,187 | 39,309,170 | 39,357,501 | 39,378,400 |
| nssv1540084 | Remapped | Perfect | NC_000008.10:g.(39 302187_39309170)_( 39357501_39378400) dup | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 39,302,187 | 39,309,170 | 39,357,501 | 39,378,400 |
| nssv1541269 | Remapped | Perfect | NC_000008.10:g.(39 302187_39309170)_( 39357501_39378400) del | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 39,302,187 | 39,309,170 | 39,357,501 | 39,378,400 |
| nssv1550318 | Remapped | Perfect | NC_000008.10:g.(39 302187_39309170)_( 39357501_39378400) dup | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 39,302,187 | 39,309,170 | 39,357,501 | 39,378,400 |
| nssv1551521 | Remapped | Perfect | NC_000008.10:g.(39 302187_39309170)_( 39357501_39378400) del | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 39,302,187 | 39,309,170 | 39,357,501 | 39,378,400 |
| nssv1554182 | Remapped | Perfect | NC_000008.10:g.(39 302187_39309170)_( 39357501_39378400) del | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 39,302,187 | 39,309,170 | 39,357,501 | 39,378,400 |
| nssv1557725 | Remapped | Perfect | NC_000008.10:g.(39 302187_39309170)_( 39357501_39378400) del | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 39,302,187 | 39,309,170 | 39,357,501 | 39,378,400 |
| nssv1557840 | Remapped | Perfect | NC_000008.10:g.(39 302187_39309170)_( 39357501_39378400) del | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 39,302,187 | 39,309,170 | 39,357,501 | 39,378,400 |
| nssv1561641 | Remapped | Perfect | NC_000008.10:g.(39 302187_39309170)_( 39357501_39378400) dup | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 39,302,187 | 39,309,170 | 39,357,501 | 39,378,400 |
| nssv1579068 | Remapped | Perfect | NC_000008.10:g.(39 302187_39309170)_( 39357501_39378400) dup | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 39,302,187 | 39,309,170 | 39,357,501 | 39,378,400 |
| nssv1585656 | Remapped | Perfect | NC_000008.10:g.(39 302187_39309170)_( 39357501_39378400) dup | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 39,302,187 | 39,309,170 | 39,357,501 | 39,378,400 |
| nssv1586573 | Remapped | Perfect | NC_000008.10:g.(39 302187_39309170)_( 39357501_39378400) dup | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 39,302,187 | 39,309,170 | 39,357,501 | 39,378,400 |
| nssv1589191 | Remapped | Perfect | NC_000008.10:g.(39 302187_39309170)_( 39357501_39378400) dup | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 39,302,187 | 39,309,170 | 39,357,501 | 39,378,400 |
| nssv1589712 | Remapped | Perfect | NC_000008.10:g.(39 302187_39309170)_( 39357501_39378400) dup | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 39,302,187 | 39,309,170 | 39,357,501 | 39,378,400 |
| nssv1599234 | Remapped | Perfect | NC_000008.10:g.(39 302187_39309170)_( 39357501_39378400) del | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 39,302,187 | 39,309,170 | 39,357,501 | 39,378,400 |
| nssv1599591 | Remapped | Perfect | NC_000008.10:g.(39 302187_39309170)_( 39357501_39378400) dup | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 39,302,187 | 39,309,170 | 39,357,501 | 39,378,400 |
| nssv1599834 | Remapped | Perfect | NC_000008.10:g.(39 302187_39309170)_( 39357501_39378400) del | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 39,302,187 | 39,309,170 | 39,357,501 | 39,378,400 |
| nssv1600202 | Remapped | Perfect | NC_000008.10:g.(39 302187_39309170)_( 39357501_39378400) del | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 39,302,187 | 39,309,170 | 39,357,501 | 39,378,400 |
| nssv1525914 | Submitted genomic | NC_000008.9:g.(394 21344_39428327)_(3 9476658_39497557)d el | NCBI36 (hg18) | NC_000008.9 | Chr8 | 39,421,344 | 39,428,327 | 39,476,658 | 39,497,557 | ||
| nssv1530061 | Submitted genomic | NC_000008.9:g.(394 21344_39428327)_(3 9476658_39497557)d up | NCBI36 (hg18) | NC_000008.9 | Chr8 | 39,421,344 | 39,428,327 | 39,476,658 | 39,497,557 | ||
| nssv1536637 | Submitted genomic | NC_000008.9:g.(394 21344_39428327)_(3 9476658_39497557)d up | NCBI36 (hg18) | NC_000008.9 | Chr8 | 39,421,344 | 39,428,327 | 39,476,658 | 39,497,557 | ||
| nssv1538970 | Submitted genomic | NC_000008.9:g.(394 21344_39428327)_(3 9476658_39497557)d el | NCBI36 (hg18) | NC_000008.9 | Chr8 | 39,421,344 | 39,428,327 | 39,476,658 | 39,497,557 | ||
| nssv1540084 | Submitted genomic | NC_000008.9:g.(394 21344_39428327)_(3 9476658_39497557)d up | NCBI36 (hg18) | NC_000008.9 | Chr8 | 39,421,344 | 39,428,327 | 39,476,658 | 39,497,557 | ||
| nssv1541269 | Submitted genomic | NC_000008.9:g.(394 21344_39428327)_(3 9476658_39497557)d el | NCBI36 (hg18) | NC_000008.9 | Chr8 | 39,421,344 | 39,428,327 | 39,476,658 | 39,497,557 | ||
| nssv1550318 | Submitted genomic | NC_000008.9:g.(394 21344_39428327)_(3 9476658_39497557)d up | NCBI36 (hg18) | NC_000008.9 | Chr8 | 39,421,344 | 39,428,327 | 39,476,658 | 39,497,557 | ||
| nssv1551521 | Submitted genomic | NC_000008.9:g.(394 21344_39428327)_(3 9476658_39497557)d el | NCBI36 (hg18) | NC_000008.9 | Chr8 | 39,421,344 | 39,428,327 | 39,476,658 | 39,497,557 | ||
| nssv1554182 | Submitted genomic | NC_000008.9:g.(394 21344_39428327)_(3 9476658_39497557)d el | NCBI36 (hg18) | NC_000008.9 | Chr8 | 39,421,344 | 39,428,327 | 39,476,658 | 39,497,557 | ||
| nssv1557725 | Submitted genomic | NC_000008.9:g.(394 21344_39428327)_(3 9476658_39497557)d el | NCBI36 (hg18) | NC_000008.9 | Chr8 | 39,421,344 | 39,428,327 | 39,476,658 | 39,497,557 | ||
| nssv1557840 | Submitted genomic | NC_000008.9:g.(394 21344_39428327)_(3 9476658_39497557)d el | NCBI36 (hg18) | NC_000008.9 | Chr8 | 39,421,344 | 39,428,327 | 39,476,658 | 39,497,557 | ||
| nssv1561641 | Submitted genomic | NC_000008.9:g.(394 21344_39428327)_(3 9476658_39497557)d up | NCBI36 (hg18) | NC_000008.9 | Chr8 | 39,421,344 | 39,428,327 | 39,476,658 | 39,497,557 | ||
| nssv1579068 | Submitted genomic | NC_000008.9:g.(394 21344_39428327)_(3 9476658_39497557)d up | NCBI36 (hg18) | NC_000008.9 | Chr8 | 39,421,344 | 39,428,327 | 39,476,658 | 39,497,557 | ||
| nssv1585656 | Submitted genomic | NC_000008.9:g.(394 21344_39428327)_(3 9476658_39497557)d up | NCBI36 (hg18) | NC_000008.9 | Chr8 | 39,421,344 | 39,428,327 | 39,476,658 | 39,497,557 | ||
| nssv1586573 | Submitted genomic | NC_000008.9:g.(394 21344_39428327)_(3 9476658_39497557)d up | NCBI36 (hg18) | NC_000008.9 | Chr8 | 39,421,344 | 39,428,327 | 39,476,658 | 39,497,557 | ||
| nssv1589191 | Submitted genomic | NC_000008.9:g.(394 21344_39428327)_(3 9476658_39497557)d up | NCBI36 (hg18) | NC_000008.9 | Chr8 | 39,421,344 | 39,428,327 | 39,476,658 | 39,497,557 | ||
| nssv1589712 | Submitted genomic | NC_000008.9:g.(394 21344_39428327)_(3 9476658_39497557)d up | NCBI36 (hg18) | NC_000008.9 | Chr8 | 39,421,344 | 39,428,327 | 39,476,658 | 39,497,557 | ||
| nssv1599234 | Submitted genomic | NC_000008.9:g.(394 21344_39428327)_(3 9476658_39497557)d el | NCBI36 (hg18) | NC_000008.9 | Chr8 | 39,421,344 | 39,428,327 | 39,476,658 | 39,497,557 | ||
| nssv1599591 | Submitted genomic | NC_000008.9:g.(394 21344_39428327)_(3 9476658_39497557)d up | NCBI36 (hg18) | NC_000008.9 | Chr8 | 39,421,344 | 39,428,327 | 39,476,658 | 39,497,557 | ||
| nssv1599834 | Submitted genomic | NC_000008.9:g.(394 21344_39428327)_(3 9476658_39497557)d el | NCBI36 (hg18) | NC_000008.9 | Chr8 | 39,421,344 | 39,428,327 | 39,476,658 | 39,497,557 | ||
| nssv1600202 | Submitted genomic | NC_000008.9:g.(394 21344_39428327)_(3 9476658_39497557)d el | NCBI36 (hg18) | NC_000008.9 | Chr8 | 39,421,344 | 39,428,327 | 39,476,658 | 39,497,557 |