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dbVar

Database of genomic structural variation

nsv890890

Organism: Homo sapiens

Study:nstd71 (Xu et al. 2011)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:6
Validation:Not tested
Clinical Assertions: No
Region Size:119,055

Publication(s):Xu et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 422 SVs from 48 studies. See in: genome view

Remapped(Score: Perfect):50,915,213-51,034,267

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv890890	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000008.11	Chr8	50,915,213	50,922,585	51,024,072	51,034,267
nsv890890	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000008.10	Chr8	51,827,773	51,835,145	51,936,632	51,946,827
nsv890890	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000008.9	Chr8	51,990,326	51,997,698	52,099,185	52,109,380

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1564140	copy number loss	IS30171	SNP array	SNP genotyping analysis	56
nssv1565391	copy number loss	IS30409	SNP array	SNP genotyping analysis	21
nssv1578562	copy number loss	IS34805	SNP array	SNP genotyping analysis	28
nssv1584434	copy number loss	IS36992	SNP array	SNP genotyping analysis	17
nssv1596753	copy number loss	IS40627	SNP array	SNP genotyping analysis	34
nssv1599701	copy number loss	IS41771	SNP array	SNP genotyping analysis	15

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1564140	Remapped	Perfect	NC_000008.11:g.(50 915213_50922585)_( 51024072_51034267) del	GRCh38.p12	First Pass	NC_000008.11	Chr8	50,915,213	50,922,585	51,024,072	51,034,267
nssv1565391	Remapped	Perfect	NC_000008.11:g.(50 915213_50922585)_( 51024072_51034267) del	GRCh38.p12	First Pass	NC_000008.11	Chr8	50,915,213	50,922,585	51,024,072	51,034,267
nssv1578562	Remapped	Perfect	NC_000008.11:g.(50 915213_50922585)_( 51024072_51034267) del	GRCh38.p12	First Pass	NC_000008.11	Chr8	50,915,213	50,922,585	51,024,072	51,034,267
nssv1584434	Remapped	Perfect	NC_000008.11:g.(50 915213_50922585)_( 51024072_51034267) del	GRCh38.p12	First Pass	NC_000008.11	Chr8	50,915,213	50,922,585	51,024,072	51,034,267
nssv1596753	Remapped	Perfect	NC_000008.11:g.(50 915213_50922585)_( 51024072_51034267) del	GRCh38.p12	First Pass	NC_000008.11	Chr8	50,915,213	50,922,585	51,024,072	51,034,267
nssv1599701	Remapped	Perfect	NC_000008.11:g.(50 915213_50922585)_( 51024072_51034267) del	GRCh38.p12	First Pass	NC_000008.11	Chr8	50,915,213	50,922,585	51,024,072	51,034,267
nssv1564140	Remapped	Perfect	NC_000008.10:g.(51 827773_51835145)_( 51936632_51946827) del	GRCh37.p13	First Pass	NC_000008.10	Chr8	51,827,773	51,835,145	51,936,632	51,946,827
nssv1565391	Remapped	Perfect	NC_000008.10:g.(51 827773_51835145)_( 51936632_51946827) del	GRCh37.p13	First Pass	NC_000008.10	Chr8	51,827,773	51,835,145	51,936,632	51,946,827
nssv1578562	Remapped	Perfect	NC_000008.10:g.(51 827773_51835145)_( 51936632_51946827) del	GRCh37.p13	First Pass	NC_000008.10	Chr8	51,827,773	51,835,145	51,936,632	51,946,827
nssv1584434	Remapped	Perfect	NC_000008.10:g.(51 827773_51835145)_( 51936632_51946827) del	GRCh37.p13	First Pass	NC_000008.10	Chr8	51,827,773	51,835,145	51,936,632	51,946,827
nssv1596753	Remapped	Perfect	NC_000008.10:g.(51 827773_51835145)_( 51936632_51946827) del	GRCh37.p13	First Pass	NC_000008.10	Chr8	51,827,773	51,835,145	51,936,632	51,946,827
nssv1599701	Remapped	Perfect	NC_000008.10:g.(51 827773_51835145)_( 51936632_51946827) del	GRCh37.p13	First Pass	NC_000008.10	Chr8	51,827,773	51,835,145	51,936,632	51,946,827
nssv1564140	Submitted genomic		NC_000008.9:g.(519 90326_51997698)_(5 2099185_52109380)d el	NCBI36 (hg18)		NC_000008.9	Chr8	51,990,326	51,997,698	52,099,185	52,109,380
nssv1565391	Submitted genomic		NC_000008.9:g.(519 90326_51997698)_(5 2099185_52109380)d el	NCBI36 (hg18)		NC_000008.9	Chr8	51,990,326	51,997,698	52,099,185	52,109,380
nssv1578562	Submitted genomic		NC_000008.9:g.(519 90326_51997698)_(5 2099185_52109380)d el	NCBI36 (hg18)		NC_000008.9	Chr8	51,990,326	51,997,698	52,099,185	52,109,380
nssv1584434	Submitted genomic		NC_000008.9:g.(519 90326_51997698)_(5 2099185_52109380)d el	NCBI36 (hg18)		NC_000008.9	Chr8	51,990,326	51,997,698	52,099,185	52,109,380
nssv1596753	Submitted genomic		NC_000008.9:g.(519 90326_51997698)_(5 2099185_52109380)d el	NCBI36 (hg18)		NC_000008.9	Chr8	51,990,326	51,997,698	52,099,185	52,109,380
nssv1599701	Submitted genomic		NC_000008.9:g.(519 90326_51997698)_(5 2099185_52109380)d el	NCBI36 (hg18)		NC_000008.9	Chr8	51,990,326	51,997,698	52,099,185	52,109,380

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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