nsv890893
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:66,269
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 270 SVs from 41 studies. See in: genome view
Overlapping variant regions from other studies: 270 SVs from 41 studies. See in: genome view
Overlapping variant regions from other studies: 74 SVs from 18 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv890893 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000008.11 | Chr8 | 51,041,881 | 51,046,552 | 51,076,018 | 51,108,149 |
| nsv890893 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000008.10 | Chr8 | 51,954,441 | 51,959,112 | 51,988,578 | 52,020,709 |
| nsv890893 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000008.9 | Chr8 | 52,116,994 | 52,121,665 | 52,151,131 | 52,183,262 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1569165 | copy number loss | IS31481 | SNP array | SNP genotyping analysis | 16 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1569165 | Remapped | Perfect | NC_000008.11:g.(51 041881_51046552)_( 51076018_51108149) del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 51,041,881 | 51,046,552 | 51,076,018 | 51,108,149 |
| nssv1569165 | Remapped | Perfect | NC_000008.10:g.(51 954441_51959112)_( 51988578_52020709) del | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 51,954,441 | 51,959,112 | 51,988,578 | 52,020,709 |
| nssv1569165 | Submitted genomic | NC_000008.9:g.(521 16994_52121665)_(5 2151131_52183262)d el | NCBI36 (hg18) | NC_000008.9 | Chr8 | 52,116,994 | 52,121,665 | 52,151,131 | 52,183,262 |