nsv890998
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:18,476
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 565 SVs from 84 studies. See in: genome view
Overlapping variant regions from other studies: 565 SVs from 84 studies. See in: genome view
Overlapping variant regions from other studies: 257 SVs from 26 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv890998 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000008.11 | Chr8 | 71,288,208 | 71,294,685 | 71,305,947 | 71,306,683 |
| nsv890998 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000008.10 | Chr8 | 72,200,443 | 72,206,920 | 72,218,182 | 72,218,918 |
| nsv890998 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000008.9 | Chr8 | 72,362,997 | 72,369,474 | 72,380,736 | 72,381,472 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1569275 | copy number loss | IS31554 | SNP array | SNP genotyping analysis | 56 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1569275 | Remapped | Perfect | NC_000008.11:g.(71 288208_71294685)_( 71305947_71306683) del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 71,288,208 | 71,294,685 | 71,305,947 | 71,306,683 |
| nssv1569275 | Remapped | Perfect | NC_000008.10:g.(72 200443_72206920)_( 72218182_72218918) del | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 72,200,443 | 72,206,920 | 72,218,182 | 72,218,918 |
| nssv1569275 | Submitted genomic | NC_000008.9:g.(723 62997_72369474)_(7 2380736_72381472)d el | NCBI36 (hg18) | NC_000008.9 | Chr8 | 72,362,997 | 72,369,474 | 72,380,736 | 72,381,472 |