nsv891101
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:292,147
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 884 SVs from 64 studies. See in: genome view
Overlapping variant regions from other studies: 884 SVs from 64 studies. See in: genome view
Overlapping variant regions from other studies: 229 SVs from 16 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv891101 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000008.11 | Chr8 | 83,579,824 | 83,585,672 | 83,865,054 | 83,871,970 |
| nsv891101 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000008.10 | Chr8 | 84,492,059 | 84,497,907 | 84,777,289 | 84,784,205 |
| nsv891101 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000008.9 | Chr8 | 84,654,614 | 84,660,462 | 84,939,844 | 84,946,760 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1536773 | copy number loss | MS12947 | SNP array | SNP genotyping analysis | 22 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1536773 | Remapped | Perfect | NC_000008.11:g.(83 579824_83585672)_( 83865054_83871970) del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 83,579,824 | 83,585,672 | 83,865,054 | 83,871,970 |
| nssv1536773 | Remapped | Perfect | NC_000008.10:g.(84 492059_84497907)_( 84777289_84784205) del | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 84,492,059 | 84,497,907 | 84,777,289 | 84,784,205 |
| nssv1536773 | Submitted genomic | NC_000008.9:g.(846 54614_84660462)_(8 4939844_84946760)d el | NCBI36 (hg18) | NC_000008.9 | Chr8 | 84,654,614 | 84,660,462 | 84,939,844 | 84,946,760 |