nsv891173
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:8
- Validation:Not tested
- Clinical Assertions: No
- Region Size:487,568
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1400 SVs from 74 studies. See in: genome view
Overlapping variant regions from other studies: 1400 SVs from 74 studies. See in: genome view
Overlapping variant regions from other studies: 395 SVs from 21 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv891173 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000008.11 | Chr8 | 88,496,994 | 88,501,557 | 88,981,259 | 88,984,561 |
| nsv891173 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000008.10 | Chr8 | 89,509,223 | 89,513,786 | 89,993,488 | 89,996,790 |
| nsv891173 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000008.9 | Chr8 | 89,578,339 | 89,582,902 | 90,062,604 | 90,065,906 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1501329 | copy number loss | SP50823 | SNP array | SNP genotyping analysis | 16 |
| nssv1504238 | copy number loss | SP52338 | SNP array | SNP genotyping analysis | 15 |
| nssv1508386 | copy number loss | SP54625 | SNP array | SNP genotyping analysis | 17 |
| nssv1518925 | copy number loss | SP58561 | SNP array | SNP genotyping analysis | 14 |
| nssv1522385 | copy number loss | SP52982 | SNP array | SNP genotyping analysis | 6 |
| nssv1522706 | copy number loss | SP53399 | SNP array | SNP genotyping analysis | 13 |
| nssv1527795 | copy number loss | SP80994 | SNP array | SNP genotyping analysis | 16 |
| nssv1559945 | copy number loss | MS24225 | SNP array | SNP genotyping analysis | 13 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1501329 | Remapped | Perfect | NC_000008.11:g.(88 496994_88501557)_( 88981259_88984561) del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 88,496,994 | 88,501,557 | 88,981,259 | 88,984,561 |
| nssv1504238 | Remapped | Perfect | NC_000008.11:g.(88 496994_88501557)_( 88981259_88984561) del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 88,496,994 | 88,501,557 | 88,981,259 | 88,984,561 |
| nssv1508386 | Remapped | Perfect | NC_000008.11:g.(88 496994_88501557)_( 88981259_88984561) del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 88,496,994 | 88,501,557 | 88,981,259 | 88,984,561 |
| nssv1518925 | Remapped | Perfect | NC_000008.11:g.(88 496994_88501557)_( 88981259_88984561) del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 88,496,994 | 88,501,557 | 88,981,259 | 88,984,561 |
| nssv1522385 | Remapped | Perfect | NC_000008.11:g.(88 496994_88501557)_( 88981259_88984561) del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 88,496,994 | 88,501,557 | 88,981,259 | 88,984,561 |
| nssv1522706 | Remapped | Perfect | NC_000008.11:g.(88 496994_88501557)_( 88981259_88984561) del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 88,496,994 | 88,501,557 | 88,981,259 | 88,984,561 |
| nssv1527795 | Remapped | Perfect | NC_000008.11:g.(88 496994_88501557)_( 88981259_88984561) del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 88,496,994 | 88,501,557 | 88,981,259 | 88,984,561 |
| nssv1559945 | Remapped | Perfect | NC_000008.11:g.(88 496994_88501557)_( 88981259_88984561) del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 88,496,994 | 88,501,557 | 88,981,259 | 88,984,561 |
| nssv1501329 | Remapped | Perfect | NC_000008.10:g.(89 509223_89513786)_( 89993488_89996790) del | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 89,509,223 | 89,513,786 | 89,993,488 | 89,996,790 |
| nssv1504238 | Remapped | Perfect | NC_000008.10:g.(89 509223_89513786)_( 89993488_89996790) del | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 89,509,223 | 89,513,786 | 89,993,488 | 89,996,790 |
| nssv1508386 | Remapped | Perfect | NC_000008.10:g.(89 509223_89513786)_( 89993488_89996790) del | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 89,509,223 | 89,513,786 | 89,993,488 | 89,996,790 |
| nssv1518925 | Remapped | Perfect | NC_000008.10:g.(89 509223_89513786)_( 89993488_89996790) del | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 89,509,223 | 89,513,786 | 89,993,488 | 89,996,790 |
| nssv1522385 | Remapped | Perfect | NC_000008.10:g.(89 509223_89513786)_( 89993488_89996790) del | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 89,509,223 | 89,513,786 | 89,993,488 | 89,996,790 |
| nssv1522706 | Remapped | Perfect | NC_000008.10:g.(89 509223_89513786)_( 89993488_89996790) del | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 89,509,223 | 89,513,786 | 89,993,488 | 89,996,790 |
| nssv1527795 | Remapped | Perfect | NC_000008.10:g.(89 509223_89513786)_( 89993488_89996790) del | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 89,509,223 | 89,513,786 | 89,993,488 | 89,996,790 |
| nssv1559945 | Remapped | Perfect | NC_000008.10:g.(89 509223_89513786)_( 89993488_89996790) del | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 89,509,223 | 89,513,786 | 89,993,488 | 89,996,790 |
| nssv1501329 | Submitted genomic | NC_000008.9:g.(895 78339_89582902)_(9 0062604_90065906)d el | NCBI36 (hg18) | NC_000008.9 | Chr8 | 89,578,339 | 89,582,902 | 90,062,604 | 90,065,906 | ||
| nssv1504238 | Submitted genomic | NC_000008.9:g.(895 78339_89582902)_(9 0062604_90065906)d el | NCBI36 (hg18) | NC_000008.9 | Chr8 | 89,578,339 | 89,582,902 | 90,062,604 | 90,065,906 | ||
| nssv1508386 | Submitted genomic | NC_000008.9:g.(895 78339_89582902)_(9 0062604_90065906)d el | NCBI36 (hg18) | NC_000008.9 | Chr8 | 89,578,339 | 89,582,902 | 90,062,604 | 90,065,906 | ||
| nssv1518925 | Submitted genomic | NC_000008.9:g.(895 78339_89582902)_(9 0062604_90065906)d el | NCBI36 (hg18) | NC_000008.9 | Chr8 | 89,578,339 | 89,582,902 | 90,062,604 | 90,065,906 | ||
| nssv1522385 | Submitted genomic | NC_000008.9:g.(895 78339_89582902)_(9 0062604_90065906)d el | NCBI36 (hg18) | NC_000008.9 | Chr8 | 89,578,339 | 89,582,902 | 90,062,604 | 90,065,906 | ||
| nssv1522706 | Submitted genomic | NC_000008.9:g.(895 78339_89582902)_(9 0062604_90065906)d el | NCBI36 (hg18) | NC_000008.9 | Chr8 | 89,578,339 | 89,582,902 | 90,062,604 | 90,065,906 | ||
| nssv1527795 | Submitted genomic | NC_000008.9:g.(895 78339_89582902)_(9 0062604_90065906)d el | NCBI36 (hg18) | NC_000008.9 | Chr8 | 89,578,339 | 89,582,902 | 90,062,604 | 90,065,906 | ||
| nssv1559945 | Submitted genomic | NC_000008.9:g.(895 78339_89582902)_(9 0062604_90065906)d el | NCBI36 (hg18) | NC_000008.9 | Chr8 | 89,578,339 | 89,582,902 | 90,062,604 | 90,065,906 |