nsv891298
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:13
- Validation:Not tested
- Clinical Assertions: No
- Region Size:176,004
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 746 SVs from 63 studies. See in: genome view
Overlapping variant regions from other studies: 746 SVs from 63 studies. See in: genome view
Overlapping variant regions from other studies: 233 SVs from 17 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv891298 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000008.11 | Chr8 | 110,975,569 | 111,009,401 | 111,145,311 | 111,151,572 |
| nsv891298 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000008.10 | Chr8 | 111,987,798 | 112,021,630 | 112,157,540 | 112,163,801 |
| nsv891298 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000008.9 | Chr8 | 112,056,974 | 112,090,806 | 112,226,716 | 112,232,977 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1537938 | copy number loss | MS13426 | SNP array | SNP genotyping analysis | 38 |
| nssv1554629 | copy number loss | MS20872 | SNP array | SNP genotyping analysis | 79 |
| nssv1565958 | copy number loss | IS30539 | SNP array | SNP genotyping analysis | 72 |
| nssv1567093 | copy number loss | IS31044 | SNP array | SNP genotyping analysis | 53 |
| nssv1568687 | copy number loss | IS31330 | SNP array | SNP genotyping analysis | 66 |
| nssv1569472 | copy number loss | IS31581 | SNP array | SNP genotyping analysis | 63 |
| nssv1570319 | copy number loss | IS31879 | SNP array | SNP genotyping analysis | 17 |
| nssv1577566 | copy number loss | IS34489 | SNP array | SNP genotyping analysis | 38 |
| nssv1581846 | copy number loss | IS35742 | SNP array | SNP genotyping analysis | 62 |
| nssv1583062 | copy number loss | IS36244 | SNP array | SNP genotyping analysis | 54 |
| nssv1583253 | copy number gain | IS36364 | SNP array | SNP genotyping analysis | 27 |
| nssv1597920 | copy number loss | IS41317 | SNP array | SNP genotyping analysis | 85 |
| nssv1598153 | copy number loss | IS41224 | SNP array | SNP genotyping analysis | 51 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1537938 | Remapped | Perfect | NC_000008.11:g.(11 0975569_111009401) _(111145311_111151 572)del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 110,975,569 | 111,009,401 | 111,145,311 | 111,151,572 |
| nssv1554629 | Remapped | Perfect | NC_000008.11:g.(11 0975569_111009401) _(111145311_111151 572)del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 110,975,569 | 111,009,401 | 111,145,311 | 111,151,572 |
| nssv1565958 | Remapped | Perfect | NC_000008.11:g.(11 0975569_111009401) _(111145311_111151 572)del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 110,975,569 | 111,009,401 | 111,145,311 | 111,151,572 |
| nssv1567093 | Remapped | Perfect | NC_000008.11:g.(11 0975569_111009401) _(111145311_111151 572)del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 110,975,569 | 111,009,401 | 111,145,311 | 111,151,572 |
| nssv1568687 | Remapped | Perfect | NC_000008.11:g.(11 0975569_111009401) _(111145311_111151 572)del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 110,975,569 | 111,009,401 | 111,145,311 | 111,151,572 |
| nssv1569472 | Remapped | Perfect | NC_000008.11:g.(11 0975569_111009401) _(111145311_111151 572)del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 110,975,569 | 111,009,401 | 111,145,311 | 111,151,572 |
| nssv1570319 | Remapped | Perfect | NC_000008.11:g.(11 0975569_111009401) _(111145311_111151 572)del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 110,975,569 | 111,009,401 | 111,145,311 | 111,151,572 |
| nssv1577566 | Remapped | Perfect | NC_000008.11:g.(11 0975569_111009401) _(111145311_111151 572)del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 110,975,569 | 111,009,401 | 111,145,311 | 111,151,572 |
| nssv1581846 | Remapped | Perfect | NC_000008.11:g.(11 0975569_111009401) _(111145311_111151 572)del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 110,975,569 | 111,009,401 | 111,145,311 | 111,151,572 |
| nssv1583062 | Remapped | Perfect | NC_000008.11:g.(11 0975569_111009401) _(111145311_111151 572)del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 110,975,569 | 111,009,401 | 111,145,311 | 111,151,572 |
| nssv1583253 | Remapped | Perfect | NC_000008.11:g.(11 0975569_111009401) _(111145311_111151 572)dup | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 110,975,569 | 111,009,401 | 111,145,311 | 111,151,572 |
| nssv1597920 | Remapped | Perfect | NC_000008.11:g.(11 0975569_111009401) _(111145311_111151 572)del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 110,975,569 | 111,009,401 | 111,145,311 | 111,151,572 |
| nssv1598153 | Remapped | Perfect | NC_000008.11:g.(11 0975569_111009401) _(111145311_111151 572)del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 110,975,569 | 111,009,401 | 111,145,311 | 111,151,572 |
| nssv1537938 | Remapped | Perfect | NC_000008.10:g.(11 1987798_112021630) _(112157540_112163 801)del | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 111,987,798 | 112,021,630 | 112,157,540 | 112,163,801 |
| nssv1554629 | Remapped | Perfect | NC_000008.10:g.(11 1987798_112021630) _(112157540_112163 801)del | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 111,987,798 | 112,021,630 | 112,157,540 | 112,163,801 |
| nssv1565958 | Remapped | Perfect | NC_000008.10:g.(11 1987798_112021630) _(112157540_112163 801)del | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 111,987,798 | 112,021,630 | 112,157,540 | 112,163,801 |
| nssv1567093 | Remapped | Perfect | NC_000008.10:g.(11 1987798_112021630) _(112157540_112163 801)del | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 111,987,798 | 112,021,630 | 112,157,540 | 112,163,801 |
| nssv1568687 | Remapped | Perfect | NC_000008.10:g.(11 1987798_112021630) _(112157540_112163 801)del | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 111,987,798 | 112,021,630 | 112,157,540 | 112,163,801 |
| nssv1569472 | Remapped | Perfect | NC_000008.10:g.(11 1987798_112021630) _(112157540_112163 801)del | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 111,987,798 | 112,021,630 | 112,157,540 | 112,163,801 |
| nssv1570319 | Remapped | Perfect | NC_000008.10:g.(11 1987798_112021630) _(112157540_112163 801)del | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 111,987,798 | 112,021,630 | 112,157,540 | 112,163,801 |
| nssv1577566 | Remapped | Perfect | NC_000008.10:g.(11 1987798_112021630) _(112157540_112163 801)del | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 111,987,798 | 112,021,630 | 112,157,540 | 112,163,801 |
| nssv1581846 | Remapped | Perfect | NC_000008.10:g.(11 1987798_112021630) _(112157540_112163 801)del | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 111,987,798 | 112,021,630 | 112,157,540 | 112,163,801 |
| nssv1583062 | Remapped | Perfect | NC_000008.10:g.(11 1987798_112021630) _(112157540_112163 801)del | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 111,987,798 | 112,021,630 | 112,157,540 | 112,163,801 |
| nssv1583253 | Remapped | Perfect | NC_000008.10:g.(11 1987798_112021630) _(112157540_112163 801)dup | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 111,987,798 | 112,021,630 | 112,157,540 | 112,163,801 |
| nssv1597920 | Remapped | Perfect | NC_000008.10:g.(11 1987798_112021630) _(112157540_112163 801)del | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 111,987,798 | 112,021,630 | 112,157,540 | 112,163,801 |
| nssv1598153 | Remapped | Perfect | NC_000008.10:g.(11 1987798_112021630) _(112157540_112163 801)del | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 111,987,798 | 112,021,630 | 112,157,540 | 112,163,801 |
| nssv1537938 | Submitted genomic | NC_000008.9:g.(112 056974_112090806)_ (112226716_1122329 77)del | NCBI36 (hg18) | NC_000008.9 | Chr8 | 112,056,974 | 112,090,806 | 112,226,716 | 112,232,977 | ||
| nssv1554629 | Submitted genomic | NC_000008.9:g.(112 056974_112090806)_ (112226716_1122329 77)del | NCBI36 (hg18) | NC_000008.9 | Chr8 | 112,056,974 | 112,090,806 | 112,226,716 | 112,232,977 | ||
| nssv1565958 | Submitted genomic | NC_000008.9:g.(112 056974_112090806)_ (112226716_1122329 77)del | NCBI36 (hg18) | NC_000008.9 | Chr8 | 112,056,974 | 112,090,806 | 112,226,716 | 112,232,977 | ||
| nssv1567093 | Submitted genomic | NC_000008.9:g.(112 056974_112090806)_ (112226716_1122329 77)del | NCBI36 (hg18) | NC_000008.9 | Chr8 | 112,056,974 | 112,090,806 | 112,226,716 | 112,232,977 | ||
| nssv1568687 | Submitted genomic | NC_000008.9:g.(112 056974_112090806)_ (112226716_1122329 77)del | NCBI36 (hg18) | NC_000008.9 | Chr8 | 112,056,974 | 112,090,806 | 112,226,716 | 112,232,977 | ||
| nssv1569472 | Submitted genomic | NC_000008.9:g.(112 056974_112090806)_ (112226716_1122329 77)del | NCBI36 (hg18) | NC_000008.9 | Chr8 | 112,056,974 | 112,090,806 | 112,226,716 | 112,232,977 | ||
| nssv1570319 | Submitted genomic | NC_000008.9:g.(112 056974_112090806)_ (112226716_1122329 77)del | NCBI36 (hg18) | NC_000008.9 | Chr8 | 112,056,974 | 112,090,806 | 112,226,716 | 112,232,977 | ||
| nssv1577566 | Submitted genomic | NC_000008.9:g.(112 056974_112090806)_ (112226716_1122329 77)del | NCBI36 (hg18) | NC_000008.9 | Chr8 | 112,056,974 | 112,090,806 | 112,226,716 | 112,232,977 | ||
| nssv1581846 | Submitted genomic | NC_000008.9:g.(112 056974_112090806)_ (112226716_1122329 77)del | NCBI36 (hg18) | NC_000008.9 | Chr8 | 112,056,974 | 112,090,806 | 112,226,716 | 112,232,977 | ||
| nssv1583062 | Submitted genomic | NC_000008.9:g.(112 056974_112090806)_ (112226716_1122329 77)del | NCBI36 (hg18) | NC_000008.9 | Chr8 | 112,056,974 | 112,090,806 | 112,226,716 | 112,232,977 | ||
| nssv1583253 | Submitted genomic | NC_000008.9:g.(112 056974_112090806)_ (112226716_1122329 77)dup | NCBI36 (hg18) | NC_000008.9 | Chr8 | 112,056,974 | 112,090,806 | 112,226,716 | 112,232,977 | ||
| nssv1597920 | Submitted genomic | NC_000008.9:g.(112 056974_112090806)_ (112226716_1122329 77)del | NCBI36 (hg18) | NC_000008.9 | Chr8 | 112,056,974 | 112,090,806 | 112,226,716 | 112,232,977 | ||
| nssv1598153 | Submitted genomic | NC_000008.9:g.(112 056974_112090806)_ (112226716_1122329 77)del | NCBI36 (hg18) | NC_000008.9 | Chr8 | 112,056,974 | 112,090,806 | 112,226,716 | 112,232,977 |