nsv891308
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:12
- Validation:Not tested
- Clinical Assertions: No
- Region Size:91,812
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 536 SVs from 51 studies. See in: genome view
Overlapping variant regions from other studies: 536 SVs from 51 studies. See in: genome view
Overlapping variant regions from other studies: 166 SVs from 15 studies. See in: genome view
Variant Region Placement Information
Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
---|---|---|---|---|---|---|---|---|---|---|---|
nsv891308 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000008.11 | Chr8 | 111,059,761 | 111,066,604 | 111,145,311 | 111,151,572 |
nsv891308 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000008.10 | Chr8 | 112,071,990 | 112,078,833 | 112,157,540 | 112,163,801 |
nsv891308 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000008.9 | Chr8 | 112,141,166 | 112,148,009 | 112,226,716 | 112,232,977 |
Variant Call Information
Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
---|---|---|---|---|---|
nssv1532156 | copy number loss | MS10727 | SNP array | SNP genotyping analysis | 29 |
nssv1537301 | copy number loss | MS13154 | SNP array | SNP genotyping analysis | 35 |
nssv1538415 | copy number loss | MS13727 | SNP array | SNP genotyping analysis | 76 |
nssv1558481 | copy number loss | MS23290 | SNP array | SNP genotyping analysis | 41 |
nssv1566171 | copy number loss | IS30597 | SNP array | SNP genotyping analysis | 66 |
nssv1566344 | copy number loss | IS30667 | SNP array | SNP genotyping analysis | 35 |
nssv1570088 | copy number gain | IS31799 | SNP array | SNP genotyping analysis | 23 |
nssv1571245 | copy number gain | IS32653 | SNP array | SNP genotyping analysis | 20 |
nssv1578274 | copy number gain | IS34748 | SNP array | SNP genotyping analysis | 22 |
nssv1579922 | copy number loss | IS35189 | SNP array | SNP genotyping analysis | 30 |
nssv1589252 | copy number gain | IS38330 | SNP array | SNP genotyping analysis | 35 |
nssv1600636 | copy number gain | IS41906 | SNP array | SNP genotyping analysis | 21 |
Variant Call Placement Information
Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
---|---|---|---|---|---|---|---|---|---|---|---|
nssv1532156 | Remapped | Perfect | NC_000008.11:g.(11 1059761_111066604) _(111145311_111151 572)del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 111,059,761 | 111,066,604 | 111,145,311 | 111,151,572 |
nssv1537301 | Remapped | Perfect | NC_000008.11:g.(11 1059761_111066604) _(111145311_111151 572)del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 111,059,761 | 111,066,604 | 111,145,311 | 111,151,572 |
nssv1538415 | Remapped | Perfect | NC_000008.11:g.(11 1059761_111066604) _(111145311_111151 572)del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 111,059,761 | 111,066,604 | 111,145,311 | 111,151,572 |
nssv1558481 | Remapped | Perfect | NC_000008.11:g.(11 1059761_111066604) _(111145311_111151 572)del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 111,059,761 | 111,066,604 | 111,145,311 | 111,151,572 |
nssv1566171 | Remapped | Perfect | NC_000008.11:g.(11 1059761_111066604) _(111145311_111151 572)del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 111,059,761 | 111,066,604 | 111,145,311 | 111,151,572 |
nssv1566344 | Remapped | Perfect | NC_000008.11:g.(11 1059761_111066604) _(111145311_111151 572)del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 111,059,761 | 111,066,604 | 111,145,311 | 111,151,572 |
nssv1570088 | Remapped | Perfect | NC_000008.11:g.(11 1059761_111066604) _(111145311_111151 572)dup | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 111,059,761 | 111,066,604 | 111,145,311 | 111,151,572 |
nssv1571245 | Remapped | Perfect | NC_000008.11:g.(11 1059761_111066604) _(111145311_111151 572)dup | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 111,059,761 | 111,066,604 | 111,145,311 | 111,151,572 |
nssv1578274 | Remapped | Perfect | NC_000008.11:g.(11 1059761_111066604) _(111145311_111151 572)dup | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 111,059,761 | 111,066,604 | 111,145,311 | 111,151,572 |
nssv1579922 | Remapped | Perfect | NC_000008.11:g.(11 1059761_111066604) _(111145311_111151 572)del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 111,059,761 | 111,066,604 | 111,145,311 | 111,151,572 |
nssv1589252 | Remapped | Perfect | NC_000008.11:g.(11 1059761_111066604) _(111145311_111151 572)dup | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 111,059,761 | 111,066,604 | 111,145,311 | 111,151,572 |
nssv1600636 | Remapped | Perfect | NC_000008.11:g.(11 1059761_111066604) _(111145311_111151 572)dup | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 111,059,761 | 111,066,604 | 111,145,311 | 111,151,572 |
nssv1532156 | Remapped | Perfect | NC_000008.10:g.(11 2071990_112078833) _(112157540_112163 801)del | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 112,071,990 | 112,078,833 | 112,157,540 | 112,163,801 |
nssv1537301 | Remapped | Perfect | NC_000008.10:g.(11 2071990_112078833) _(112157540_112163 801)del | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 112,071,990 | 112,078,833 | 112,157,540 | 112,163,801 |
nssv1538415 | Remapped | Perfect | NC_000008.10:g.(11 2071990_112078833) _(112157540_112163 801)del | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 112,071,990 | 112,078,833 | 112,157,540 | 112,163,801 |
nssv1558481 | Remapped | Perfect | NC_000008.10:g.(11 2071990_112078833) _(112157540_112163 801)del | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 112,071,990 | 112,078,833 | 112,157,540 | 112,163,801 |
nssv1566171 | Remapped | Perfect | NC_000008.10:g.(11 2071990_112078833) _(112157540_112163 801)del | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 112,071,990 | 112,078,833 | 112,157,540 | 112,163,801 |
nssv1566344 | Remapped | Perfect | NC_000008.10:g.(11 2071990_112078833) _(112157540_112163 801)del | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 112,071,990 | 112,078,833 | 112,157,540 | 112,163,801 |
nssv1570088 | Remapped | Perfect | NC_000008.10:g.(11 2071990_112078833) _(112157540_112163 801)dup | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 112,071,990 | 112,078,833 | 112,157,540 | 112,163,801 |
nssv1571245 | Remapped | Perfect | NC_000008.10:g.(11 2071990_112078833) _(112157540_112163 801)dup | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 112,071,990 | 112,078,833 | 112,157,540 | 112,163,801 |
nssv1578274 | Remapped | Perfect | NC_000008.10:g.(11 2071990_112078833) _(112157540_112163 801)dup | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 112,071,990 | 112,078,833 | 112,157,540 | 112,163,801 |
nssv1579922 | Remapped | Perfect | NC_000008.10:g.(11 2071990_112078833) _(112157540_112163 801)del | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 112,071,990 | 112,078,833 | 112,157,540 | 112,163,801 |
nssv1589252 | Remapped | Perfect | NC_000008.10:g.(11 2071990_112078833) _(112157540_112163 801)dup | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 112,071,990 | 112,078,833 | 112,157,540 | 112,163,801 |
nssv1600636 | Remapped | Perfect | NC_000008.10:g.(11 2071990_112078833) _(112157540_112163 801)dup | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 112,071,990 | 112,078,833 | 112,157,540 | 112,163,801 |
nssv1532156 | Submitted genomic | NC_000008.9:g.(112 141166_112148009)_ (112226716_1122329 77)del | NCBI36 (hg18) | NC_000008.9 | Chr8 | 112,141,166 | 112,148,009 | 112,226,716 | 112,232,977 | ||
nssv1537301 | Submitted genomic | NC_000008.9:g.(112 141166_112148009)_ (112226716_1122329 77)del | NCBI36 (hg18) | NC_000008.9 | Chr8 | 112,141,166 | 112,148,009 | 112,226,716 | 112,232,977 | ||
nssv1538415 | Submitted genomic | NC_000008.9:g.(112 141166_112148009)_ (112226716_1122329 77)del | NCBI36 (hg18) | NC_000008.9 | Chr8 | 112,141,166 | 112,148,009 | 112,226,716 | 112,232,977 | ||
nssv1558481 | Submitted genomic | NC_000008.9:g.(112 141166_112148009)_ (112226716_1122329 77)del | NCBI36 (hg18) | NC_000008.9 | Chr8 | 112,141,166 | 112,148,009 | 112,226,716 | 112,232,977 | ||
nssv1566171 | Submitted genomic | NC_000008.9:g.(112 141166_112148009)_ (112226716_1122329 77)del | NCBI36 (hg18) | NC_000008.9 | Chr8 | 112,141,166 | 112,148,009 | 112,226,716 | 112,232,977 | ||
nssv1566344 | Submitted genomic | NC_000008.9:g.(112 141166_112148009)_ (112226716_1122329 77)del | NCBI36 (hg18) | NC_000008.9 | Chr8 | 112,141,166 | 112,148,009 | 112,226,716 | 112,232,977 | ||
nssv1570088 | Submitted genomic | NC_000008.9:g.(112 141166_112148009)_ (112226716_1122329 77)dup | NCBI36 (hg18) | NC_000008.9 | Chr8 | 112,141,166 | 112,148,009 | 112,226,716 | 112,232,977 | ||
nssv1571245 | Submitted genomic | NC_000008.9:g.(112 141166_112148009)_ (112226716_1122329 77)dup | NCBI36 (hg18) | NC_000008.9 | Chr8 | 112,141,166 | 112,148,009 | 112,226,716 | 112,232,977 | ||
nssv1578274 | Submitted genomic | NC_000008.9:g.(112 141166_112148009)_ (112226716_1122329 77)dup | NCBI36 (hg18) | NC_000008.9 | Chr8 | 112,141,166 | 112,148,009 | 112,226,716 | 112,232,977 | ||
nssv1579922 | Submitted genomic | NC_000008.9:g.(112 141166_112148009)_ (112226716_1122329 77)del | NCBI36 (hg18) | NC_000008.9 | Chr8 | 112,141,166 | 112,148,009 | 112,226,716 | 112,232,977 | ||
nssv1589252 | Submitted genomic | NC_000008.9:g.(112 141166_112148009)_ (112226716_1122329 77)dup | NCBI36 (hg18) | NC_000008.9 | Chr8 | 112,141,166 | 112,148,009 | 112,226,716 | 112,232,977 | ||
nssv1600636 | Submitted genomic | NC_000008.9:g.(112 141166_112148009)_ (112226716_1122329 77)dup | NCBI36 (hg18) | NC_000008.9 | Chr8 | 112,141,166 | 112,148,009 | 112,226,716 | 112,232,977 |