nsv891627
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:40,997
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 348 SVs from 57 studies. See in: genome view
Overlapping variant regions from other studies: 348 SVs from 57 studies. See in: genome view
Overlapping variant regions from other studies: 162 SVs from 17 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv891627 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000008.11 | Chr8 | 142,564,638 | 142,572,003 | 142,600,540 | 142,605,634 |
| nsv891627 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000008.10 | Chr8 | 143,645,999 | 143,653,364 | 143,681,901 | 143,686,995 |
| nsv891627 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000008.9 | Chr8 | 143,643,001 | 143,650,366 | 143,678,903 | 143,683,997 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1529817 | copy number loss | MS10123 | SNP array | SNP genotyping analysis | 152 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1529817 | Remapped | Perfect | NC_000008.11:g.(14 2564638_142572003) _(142600540_142605 634)del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 142,564,638 | 142,572,003 | 142,600,540 | 142,605,634 |
| nssv1529817 | Remapped | Perfect | NC_000008.10:g.(14 3645999_143653364) _(143681901_143686 995)del | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 143,645,999 | 143,653,364 | 143,681,901 | 143,686,995 |
| nssv1529817 | Submitted genomic | NC_000008.9:g.(143 643001_143650366)_ (143678903_1436839 97)del | NCBI36 (hg18) | NC_000008.9 | Chr8 | 143,643,001 | 143,650,366 | 143,678,903 | 143,683,997 |