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dbVar

Database of genomic structural variation

nsv891984

Organism: Homo sapiens

Study:nstd71 (Xu et al. 2011)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:3
Validation:Not tested
Clinical Assertions: No
Region Size:138,398

Publication(s):Xu et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 1837 SVs from 98 studies. See in: genome view

Remapped(Score: Perfect):510,546-648,943

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv891984	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000009.12	Chr9	510,546	515,616	635,677	648,943
nsv891984	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000009.11	Chr9	510,546	515,616	635,677	648,943
nsv891984	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000009.10	Chr9	500,546	505,616	625,677	638,943

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1531308	copy number loss	MS10391	SNP array	SNP genotyping analysis	11
nssv1548465	copy number loss	MS17857	SNP array	SNP genotyping analysis	5
nssv1550567	copy number loss	MS18465	SNP array	SNP genotyping analysis	14

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1531308	Remapped	Perfect	NC_000009.12:g.(51 0546_515616)_(6356 77_648943)del	GRCh38.p12	First Pass	NC_000009.12	Chr9	510,546	515,616	635,677	648,943
nssv1548465	Remapped	Perfect	NC_000009.12:g.(51 0546_515616)_(6356 77_648943)del	GRCh38.p12	First Pass	NC_000009.12	Chr9	510,546	515,616	635,677	648,943
nssv1550567	Remapped	Perfect	NC_000009.12:g.(51 0546_515616)_(6356 77_648943)del	GRCh38.p12	First Pass	NC_000009.12	Chr9	510,546	515,616	635,677	648,943
nssv1531308	Remapped	Perfect	NC_000009.11:g.(51 0546_515616)_(6356 77_648943)del	GRCh37.p13	First Pass	NC_000009.11	Chr9	510,546	515,616	635,677	648,943
nssv1548465	Remapped	Perfect	NC_000009.11:g.(51 0546_515616)_(6356 77_648943)del	GRCh37.p13	First Pass	NC_000009.11	Chr9	510,546	515,616	635,677	648,943
nssv1550567	Remapped	Perfect	NC_000009.11:g.(51 0546_515616)_(6356 77_648943)del	GRCh37.p13	First Pass	NC_000009.11	Chr9	510,546	515,616	635,677	648,943
nssv1531308	Submitted genomic		NC_000009.10:g.(50 0546_505616)_(6256 77_638943)del	NCBI36 (hg18)		NC_000009.10	Chr9	500,546	505,616	625,677	638,943
nssv1548465	Submitted genomic		NC_000009.10:g.(50 0546_505616)_(6256 77_638943)del	NCBI36 (hg18)		NC_000009.10	Chr9	500,546	505,616	625,677	638,943
nssv1550567	Submitted genomic		NC_000009.10:g.(50 0546_505616)_(6256 77_638943)del	NCBI36 (hg18)		NC_000009.10	Chr9	500,546	505,616	625,677	638,943

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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