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dbVar

Database of genomic structural variation

nsv892178

Organism: Homo sapiens

Study:nstd71 (Xu et al. 2011)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:3
Validation:Not tested
Clinical Assertions: No
Region Size:76,600

Publication(s):Xu et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 1468 SVs from 98 studies. See in: genome view

Remapped(Score: Perfect):6,673,957-6,750,556

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv892178	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000009.12	Chr9	6,673,957	6,676,953	6,739,489	6,750,556
nsv892178	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000009.11	Chr9	6,673,957	6,676,953	6,739,489	6,750,556
nsv892178	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000009.10	Chr9	6,663,957	6,666,953	6,729,489	6,740,556

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1545721	copy number loss	MS16921	SNP array	SNP genotyping analysis	8
nssv1549520	copy number loss	MS18256	SNP array	SNP genotyping analysis	8
nssv1562417	copy number loss	MS25579	SNP array	SNP genotyping analysis	10

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1545721	Remapped	Perfect	NC_000009.12:g.(66 73957_6676953)_(67 39489_6750556)del	GRCh38.p12	First Pass	NC_000009.12	Chr9	6,673,957	6,676,953	6,739,489	6,750,556
nssv1549520	Remapped	Perfect	NC_000009.12:g.(66 73957_6676953)_(67 39489_6750556)del	GRCh38.p12	First Pass	NC_000009.12	Chr9	6,673,957	6,676,953	6,739,489	6,750,556
nssv1562417	Remapped	Perfect	NC_000009.12:g.(66 73957_6676953)_(67 39489_6750556)del	GRCh38.p12	First Pass	NC_000009.12	Chr9	6,673,957	6,676,953	6,739,489	6,750,556
nssv1545721	Remapped	Perfect	NC_000009.11:g.(66 73957_6676953)_(67 39489_6750556)del	GRCh37.p13	First Pass	NC_000009.11	Chr9	6,673,957	6,676,953	6,739,489	6,750,556
nssv1549520	Remapped	Perfect	NC_000009.11:g.(66 73957_6676953)_(67 39489_6750556)del	GRCh37.p13	First Pass	NC_000009.11	Chr9	6,673,957	6,676,953	6,739,489	6,750,556
nssv1562417	Remapped	Perfect	NC_000009.11:g.(66 73957_6676953)_(67 39489_6750556)del	GRCh37.p13	First Pass	NC_000009.11	Chr9	6,673,957	6,676,953	6,739,489	6,750,556
nssv1545721	Submitted genomic		NC_000009.10:g.(66 63957_6666953)_(67 29489_6740556)del	NCBI36 (hg18)		NC_000009.10	Chr9	6,663,957	6,666,953	6,729,489	6,740,556
nssv1549520	Submitted genomic		NC_000009.10:g.(66 63957_6666953)_(67 29489_6740556)del	NCBI36 (hg18)		NC_000009.10	Chr9	6,663,957	6,666,953	6,729,489	6,740,556
nssv1562417	Submitted genomic		NC_000009.10:g.(66 63957_6666953)_(67 29489_6740556)del	NCBI36 (hg18)		NC_000009.10	Chr9	6,663,957	6,666,953	6,729,489	6,740,556

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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