nsv892244
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:9,046
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 375 SVs from 33 studies. See in: genome view
Overlapping variant regions from other studies: 379 SVs from 33 studies. See in: genome view
Overlapping variant regions from other studies: 213 SVs from 14 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv892244 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000009.12 | Chr9 | 8,889,419 | 8,890,725 | 8,897,676 | 8,898,464 |
| nsv892244 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000009.11 | Chr9 | 8,889,419 | 8,890,725 | 8,897,676 | 8,898,464 |
| nsv892244 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000009.10 | Chr9 | 8,879,419 | 8,880,725 | 8,887,676 | 8,888,464 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1503258 | copy number loss | SP52019 | SNP array | SNP genotyping analysis | 22 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1503258 | Remapped | Perfect | NC_000009.12:g.(88 89419_8890725)_(88 97676_8898464)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 8,889,419 | 8,890,725 | 8,897,676 | 8,898,464 |
| nssv1503258 | Remapped | Perfect | NC_000009.11:g.(88 89419_8890725)_(88 97676_8898464)del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 8,889,419 | 8,890,725 | 8,897,676 | 8,898,464 |
| nssv1503258 | Submitted genomic | NC_000009.10:g.(88 79419_8880725)_(88 87676_8888464)del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 8,879,419 | 8,880,725 | 8,887,676 | 8,888,464 |