nsv892462
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:10
- Validation:Not tested
- Clinical Assertions: No
- Region Size:73,669
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 2223 SVs from 84 studies. See in: genome view
Overlapping variant regions from other studies: 2227 SVs from 84 studies. See in: genome view
Overlapping variant regions from other studies: 680 SVs from 26 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv892462 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000009.12 | Chr9 | 11,936,706 | 11,937,390 | 12,007,658 | 12,010,374 |
| nsv892462 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000009.11 | Chr9 | 11,936,706 | 11,937,390 | 12,007,658 | 12,010,374 |
| nsv892462 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000009.10 | Chr9 | 11,926,706 | 11,927,390 | 11,997,658 | 12,000,374 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1522270 | copy number loss | SP52872 | SNP array | SNP genotyping analysis | 18 |
| nssv1528391 | copy number loss | SP81213 | SNP array | SNP genotyping analysis | 15 |
| nssv1531376 | copy number loss | MS10413 | SNP array | SNP genotyping analysis | 12 |
| nssv1538175 | copy number loss | MS13502 | SNP array | SNP genotyping analysis | 11 |
| nssv1541489 | copy number loss | MS15340 | SNP array | SNP genotyping analysis | 13 |
| nssv1542061 | copy number loss | MS15628 | SNP array | SNP genotyping analysis | 15 |
| nssv1551472 | copy number loss | MS18896 | SNP array | SNP genotyping analysis | 11 |
| nssv1554567 | copy number loss | MS20860 | SNP array | SNP genotyping analysis | 12 |
| nssv1558274 | copy number loss | MS23191 | SNP array | SNP genotyping analysis | 20 |
| nssv1563463 | copy number loss | MS26033 | SNP array | SNP genotyping analysis | 7 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1522270 | Remapped | Perfect | NC_000009.12:g.(11 936706_11937390)_( 12007658_12010374) del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 11,936,706 | 11,937,390 | 12,007,658 | 12,010,374 |
| nssv1528391 | Remapped | Perfect | NC_000009.12:g.(11 936706_11937390)_( 12007658_12010374) del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 11,936,706 | 11,937,390 | 12,007,658 | 12,010,374 |
| nssv1531376 | Remapped | Perfect | NC_000009.12:g.(11 936706_11937390)_( 12007658_12010374) del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 11,936,706 | 11,937,390 | 12,007,658 | 12,010,374 |
| nssv1538175 | Remapped | Perfect | NC_000009.12:g.(11 936706_11937390)_( 12007658_12010374) del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 11,936,706 | 11,937,390 | 12,007,658 | 12,010,374 |
| nssv1541489 | Remapped | Perfect | NC_000009.12:g.(11 936706_11937390)_( 12007658_12010374) del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 11,936,706 | 11,937,390 | 12,007,658 | 12,010,374 |
| nssv1542061 | Remapped | Perfect | NC_000009.12:g.(11 936706_11937390)_( 12007658_12010374) del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 11,936,706 | 11,937,390 | 12,007,658 | 12,010,374 |
| nssv1551472 | Remapped | Perfect | NC_000009.12:g.(11 936706_11937390)_( 12007658_12010374) del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 11,936,706 | 11,937,390 | 12,007,658 | 12,010,374 |
| nssv1554567 | Remapped | Perfect | NC_000009.12:g.(11 936706_11937390)_( 12007658_12010374) del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 11,936,706 | 11,937,390 | 12,007,658 | 12,010,374 |
| nssv1558274 | Remapped | Perfect | NC_000009.12:g.(11 936706_11937390)_( 12007658_12010374) del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 11,936,706 | 11,937,390 | 12,007,658 | 12,010,374 |
| nssv1563463 | Remapped | Perfect | NC_000009.12:g.(11 936706_11937390)_( 12007658_12010374) del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 11,936,706 | 11,937,390 | 12,007,658 | 12,010,374 |
| nssv1522270 | Remapped | Perfect | NC_000009.11:g.(11 936706_11937390)_( 12007658_12010374) del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 11,936,706 | 11,937,390 | 12,007,658 | 12,010,374 |
| nssv1528391 | Remapped | Perfect | NC_000009.11:g.(11 936706_11937390)_( 12007658_12010374) del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 11,936,706 | 11,937,390 | 12,007,658 | 12,010,374 |
| nssv1531376 | Remapped | Perfect | NC_000009.11:g.(11 936706_11937390)_( 12007658_12010374) del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 11,936,706 | 11,937,390 | 12,007,658 | 12,010,374 |
| nssv1538175 | Remapped | Perfect | NC_000009.11:g.(11 936706_11937390)_( 12007658_12010374) del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 11,936,706 | 11,937,390 | 12,007,658 | 12,010,374 |
| nssv1541489 | Remapped | Perfect | NC_000009.11:g.(11 936706_11937390)_( 12007658_12010374) del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 11,936,706 | 11,937,390 | 12,007,658 | 12,010,374 |
| nssv1542061 | Remapped | Perfect | NC_000009.11:g.(11 936706_11937390)_( 12007658_12010374) del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 11,936,706 | 11,937,390 | 12,007,658 | 12,010,374 |
| nssv1551472 | Remapped | Perfect | NC_000009.11:g.(11 936706_11937390)_( 12007658_12010374) del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 11,936,706 | 11,937,390 | 12,007,658 | 12,010,374 |
| nssv1554567 | Remapped | Perfect | NC_000009.11:g.(11 936706_11937390)_( 12007658_12010374) del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 11,936,706 | 11,937,390 | 12,007,658 | 12,010,374 |
| nssv1558274 | Remapped | Perfect | NC_000009.11:g.(11 936706_11937390)_( 12007658_12010374) del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 11,936,706 | 11,937,390 | 12,007,658 | 12,010,374 |
| nssv1563463 | Remapped | Perfect | NC_000009.11:g.(11 936706_11937390)_( 12007658_12010374) del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 11,936,706 | 11,937,390 | 12,007,658 | 12,010,374 |
| nssv1522270 | Submitted genomic | NC_000009.10:g.(11 926706_11927390)_( 11997658_12000374) del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 11,926,706 | 11,927,390 | 11,997,658 | 12,000,374 | ||
| nssv1528391 | Submitted genomic | NC_000009.10:g.(11 926706_11927390)_( 11997658_12000374) del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 11,926,706 | 11,927,390 | 11,997,658 | 12,000,374 | ||
| nssv1531376 | Submitted genomic | NC_000009.10:g.(11 926706_11927390)_( 11997658_12000374) del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 11,926,706 | 11,927,390 | 11,997,658 | 12,000,374 | ||
| nssv1538175 | Submitted genomic | NC_000009.10:g.(11 926706_11927390)_( 11997658_12000374) del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 11,926,706 | 11,927,390 | 11,997,658 | 12,000,374 | ||
| nssv1541489 | Submitted genomic | NC_000009.10:g.(11 926706_11927390)_( 11997658_12000374) del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 11,926,706 | 11,927,390 | 11,997,658 | 12,000,374 | ||
| nssv1542061 | Submitted genomic | NC_000009.10:g.(11 926706_11927390)_( 11997658_12000374) del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 11,926,706 | 11,927,390 | 11,997,658 | 12,000,374 | ||
| nssv1551472 | Submitted genomic | NC_000009.10:g.(11 926706_11927390)_( 11997658_12000374) del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 11,926,706 | 11,927,390 | 11,997,658 | 12,000,374 | ||
| nssv1554567 | Submitted genomic | NC_000009.10:g.(11 926706_11927390)_( 11997658_12000374) del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 11,926,706 | 11,927,390 | 11,997,658 | 12,000,374 | ||
| nssv1558274 | Submitted genomic | NC_000009.10:g.(11 926706_11927390)_( 11997658_12000374) del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 11,926,706 | 11,927,390 | 11,997,658 | 12,000,374 | ||
| nssv1563463 | Submitted genomic | NC_000009.10:g.(11 926706_11927390)_( 11997658_12000374) del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 11,926,706 | 11,927,390 | 11,997,658 | 12,000,374 |