nsv892542

Organism: Homo sapiens

Study:nstd71 (Xu et al. 2011)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:7
Validation:Not tested
Clinical Assertions: No
Region Size:27,014

Publication(s):Xu et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 1342 SVs from 72 studies. See in: genome view

Remapped(Score: Perfect):12,093,072-12,120,085

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv892542	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000009.12	Chr9	12,093,072	12,095,022	12,115,049	12,120,085
nsv892542	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000009.11	Chr9	12,093,072	12,095,022	12,115,049	12,120,085
nsv892542	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000009.10	Chr9	12,083,072	12,085,022	12,105,049	12,110,085

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1539642	copy number loss	MS14416	SNP array	SNP genotyping analysis	11
nssv1540135	copy number loss	MS14708	SNP array	SNP genotyping analysis	13
nssv1549389	copy number loss	MS18211	SNP array	SNP genotyping analysis	12
nssv1551579	copy number loss	MS18946	SNP array	SNP genotyping analysis	11
nssv1553225	copy number loss	MS19842	SNP array	SNP genotyping analysis	8
nssv1556142	copy number loss	MS21828	SNP array	SNP genotyping analysis	nssv1556140, nssv1556141
nssv1560638	copy number loss	MS24605	SNP array	SNP genotyping analysis	9

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1539642	Remapped	Perfect	NC_000009.12:g.(12 093072_12095022)_( 12115049_12120085) del	GRCh38.p12	First Pass	NC_000009.12	Chr9	12,093,072	12,095,022	12,115,049	12,120,085
nssv1540135	Remapped	Perfect	NC_000009.12:g.(12 093072_12095022)_( 12115049_12120085) del	GRCh38.p12	First Pass	NC_000009.12	Chr9	12,093,072	12,095,022	12,115,049	12,120,085
nssv1549389	Remapped	Perfect	NC_000009.12:g.(12 093072_12095022)_( 12115049_12120085) del	GRCh38.p12	First Pass	NC_000009.12	Chr9	12,093,072	12,095,022	12,115,049	12,120,085
nssv1551579	Remapped	Perfect	NC_000009.12:g.(12 093072_12095022)_( 12115049_12120085) del	GRCh38.p12	First Pass	NC_000009.12	Chr9	12,093,072	12,095,022	12,115,049	12,120,085
nssv1553225	Remapped	Perfect	NC_000009.12:g.(12 093072_12095022)_( 12115049_12120085) del	GRCh38.p12	First Pass	NC_000009.12	Chr9	12,093,072	12,095,022	12,115,049	12,120,085
nssv1556142	Remapped	Perfect	NC_000009.12:g.(12 093072_12095022)_( 12115049_12120085) del	GRCh38.p12	First Pass	NC_000009.12	Chr9	12,093,072	12,095,022	12,115,049	12,120,085
nssv1560638	Remapped	Perfect	NC_000009.12:g.(12 093072_12095022)_( 12115049_12120085) del	GRCh38.p12	First Pass	NC_000009.12	Chr9	12,093,072	12,095,022	12,115,049	12,120,085
nssv1539642	Remapped	Perfect	NC_000009.11:g.(12 093072_12095022)_( 12115049_12120085) del	GRCh37.p13	First Pass	NC_000009.11	Chr9	12,093,072	12,095,022	12,115,049	12,120,085
nssv1540135	Remapped	Perfect	NC_000009.11:g.(12 093072_12095022)_( 12115049_12120085) del	GRCh37.p13	First Pass	NC_000009.11	Chr9	12,093,072	12,095,022	12,115,049	12,120,085
nssv1549389	Remapped	Perfect	NC_000009.11:g.(12 093072_12095022)_( 12115049_12120085) del	GRCh37.p13	First Pass	NC_000009.11	Chr9	12,093,072	12,095,022	12,115,049	12,120,085
nssv1551579	Remapped	Perfect	NC_000009.11:g.(12 093072_12095022)_( 12115049_12120085) del	GRCh37.p13	First Pass	NC_000009.11	Chr9	12,093,072	12,095,022	12,115,049	12,120,085
nssv1553225	Remapped	Perfect	NC_000009.11:g.(12 093072_12095022)_( 12115049_12120085) del	GRCh37.p13	First Pass	NC_000009.11	Chr9	12,093,072	12,095,022	12,115,049	12,120,085
nssv1556142	Remapped	Perfect	NC_000009.11:g.(12 093072_12095022)_( 12115049_12120085) del	GRCh37.p13	First Pass	NC_000009.11	Chr9	12,093,072	12,095,022	12,115,049	12,120,085
nssv1560638	Remapped	Perfect	NC_000009.11:g.(12 093072_12095022)_( 12115049_12120085) del	GRCh37.p13	First Pass	NC_000009.11	Chr9	12,093,072	12,095,022	12,115,049	12,120,085
nssv1539642	Submitted genomic		NC_000009.10:g.(12 083072_12085022)_( 12105049_12110085) del	NCBI36 (hg18)		NC_000009.10	Chr9	12,083,072	12,085,022	12,105,049	12,110,085
nssv1540135	Submitted genomic		NC_000009.10:g.(12 083072_12085022)_( 12105049_12110085) del	NCBI36 (hg18)		NC_000009.10	Chr9	12,083,072	12,085,022	12,105,049	12,110,085
nssv1549389	Submitted genomic		NC_000009.10:g.(12 083072_12085022)_( 12105049_12110085) del	NCBI36 (hg18)		NC_000009.10	Chr9	12,083,072	12,085,022	12,105,049	12,110,085
nssv1551579	Submitted genomic		NC_000009.10:g.(12 083072_12085022)_( 12105049_12110085) del	NCBI36 (hg18)		NC_000009.10	Chr9	12,083,072	12,085,022	12,105,049	12,110,085
nssv1553225	Submitted genomic		NC_000009.10:g.(12 083072_12085022)_( 12105049_12110085) del	NCBI36 (hg18)		NC_000009.10	Chr9	12,083,072	12,085,022	12,105,049	12,110,085
nssv1556142	Submitted genomic		NC_000009.10:g.(12 083072_12085022)_( 12105049_12110085) del	NCBI36 (hg18)		NC_000009.10	Chr9	12,083,072	12,085,022	12,105,049	12,110,085
nssv1560638	Submitted genomic		NC_000009.10:g.(12 083072_12085022)_( 12105049_12110085) del	NCBI36 (hg18)		NC_000009.10	Chr9	12,083,072	12,085,022	12,105,049	12,110,085

dbVar

Database of genomic structural variation

nsv892542

Links to Other Resources

Genome View

Variant Region Placement Information

Variant Call Information

Variant Call Placement Information

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant