nsv893087
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:220,165
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 677 SVs from 77 studies. See in: genome view
Overlapping variant regions from other studies: 805 SVs from 82 studies. See in: genome view
Overlapping variant regions from other studies: 332 SVs from 28 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv893087 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000009.12 | Chr9 | 39,038,231 | 39,059,233 | 39,235,729 | 39,258,395 |
| nsv893087 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000009.11 | Chr9 | 39,038,228 | 39,059,230 | 39,235,726 | 39,258,392 |
| nsv893087 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000009.10 | Chr9 | 39,028,228 | 39,049,230 | 39,225,726 | 39,248,392 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1577728 | copy number loss | IS34543 | SNP array | SNP genotyping analysis | 21 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1577728 | Remapped | Perfect | NC_000009.12:g.(39 038231_39059233)_( 39235729_39258395) del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 39,038,231 | 39,059,233 | 39,235,729 | 39,258,395 |
| nssv1577728 | Remapped | Perfect | NC_000009.11:g.(39 038228_39059230)_( 39235726_39258392) del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 39,038,228 | 39,059,230 | 39,235,726 | 39,258,392 |
| nssv1577728 | Submitted genomic | NC_000009.10:g.(39 028228_39049230)_( 39225726_39248392) del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 39,028,228 | 39,049,230 | 39,225,726 | 39,248,392 |