nsv893097
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:140,571
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 428 SVs from 53 studies. See in: genome view
Overlapping variant regions from other studies: 440 SVs from 64 studies. See in: genome view
Overlapping variant regions from other studies: 269 SVs from 23 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv893097 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000009.12 | Chr9 | 61,289,395 | 61,302,975 | 61,420,881 | 61,429,965 |
| nsv893097 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000009.11 | Chr9 | 39,718,311 | 39,727,395 | 39,845,301 | 39,858,881 |
| nsv893097 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000009.10 | Chr9 | 39,708,311 | 39,717,395 | 39,835,301 | 39,848,881 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1577729 | copy number loss | IS34543 | SNP array | SNP genotyping analysis | 21 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1577729 | Remapped | Perfect | NC_000009.12:g.(61 289395_61302975)_( 61420881_61429965) del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 61,289,395 | 61,302,975 | 61,420,881 | 61,429,965 |
| nssv1577729 | Remapped | Perfect | NC_000009.11:g.(39 718311_39727395)_( 39845301_39858881) del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 39,718,311 | 39,727,395 | 39,845,301 | 39,858,881 |
| nssv1577729 | Submitted genomic | NC_000009.10:g.(39 708311_39717395)_( 39835301_39848881) del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 39,708,311 | 39,717,395 | 39,835,301 | 39,848,881 |