nsv893124
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:141,899
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 584 SVs from 67 studies. See in: genome view
Overlapping variant regions from other studies: 580 SVs from 74 studies. See in: genome view
Overlapping variant regions from other studies: 305 SVs from 23 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv893124 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000009.12 | Chr9 | 67,023,991 | 67,030,734 | 67,150,992 | 67,165,889 |
| nsv893124 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000009.11 | Chr9 | 40,526,952 | 40,541,849 | 40,662,107 | 40,668,850 |
| nsv893124 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000009.10 | Chr9 | 40,516,952 | 40,531,849 | 40,652,107 | 40,658,850 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1520828 | copy number gain | SP51261 | SNP array | SNP genotyping analysis | 13 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1520828 | Remapped | Perfect | NC_000009.12:g.(67 023991_67030734)_( 67150992_67165889) dup | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 67,023,991 | 67,030,734 | 67,150,992 | 67,165,889 |
| nssv1520828 | Remapped | Perfect | NC_000009.11:g.(40 526952_40541849)_( 40662107_40668850) dup | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 40,526,952 | 40,541,849 | 40,662,107 | 40,668,850 |
| nssv1520828 | Submitted genomic | NC_000009.10:g.(40 516952_40531849)_( 40652107_40658850) dup | NCBI36 (hg18) | NC_000009.10 | Chr9 | 40,516,952 | 40,531,849 | 40,652,107 | 40,658,850 |