nsv893272
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:8
- Validation:Not tested
- Clinical Assertions: No
- Region Size:116,216
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1136 SVs from 77 studies. See in: genome view
Overlapping variant regions from other studies: 1092 SVs from 77 studies. See in: genome view
Overlapping variant regions from other studies: 659 SVs from 27 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv893272 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000009.12 | Chr9 | 42,024,093 | 42,034,033 | 42,138,639 | 42,140,308 |
| nsv893272 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000009.11 | Chr9 | 43,674,081 | 43,675,750 | 43,780,356 | 43,790,296 |
| nsv893272 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000009.10 | Chr9 | 43,614,077 | 43,615,746 | 43,720,352 | 43,730,292 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1518073 | copy number loss | SP57455 | SNP array | SNP genotyping analysis | 12 |
| nssv1522309 | copy number loss | SP52893 | SNP array | SNP genotyping analysis | 19 |
| nssv1522471 | copy number gain | SP53144 | SNP array | SNP genotyping analysis | 12 |
| nssv1524811 | copy number loss | SP55302 | SNP array | SNP genotyping analysis | 9 |
| nssv1531830 | copy number gain | MS10669 | SNP array | SNP genotyping analysis | 6 |
| nssv1544067 | copy number gain | MS16228 | SNP array | SNP genotyping analysis | 15 |
| nssv1576491 | copy number gain | IS34066 | SNP array | SNP genotyping analysis | 13 |
| nssv1589293 | copy number gain | IS38334 | SNP array | SNP genotyping analysis | 10 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1518073 | Remapped | Perfect | NC_000009.12:g.(42 024093_42034033)_( 42138639_42140308) del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 42,024,093 | 42,034,033 | 42,138,639 | 42,140,308 |
| nssv1522309 | Remapped | Perfect | NC_000009.12:g.(42 024093_42034033)_( 42138639_42140308) del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 42,024,093 | 42,034,033 | 42,138,639 | 42,140,308 |
| nssv1522471 | Remapped | Perfect | NC_000009.12:g.(42 024093_42034033)_( 42138639_42140308) dup | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 42,024,093 | 42,034,033 | 42,138,639 | 42,140,308 |
| nssv1524811 | Remapped | Perfect | NC_000009.12:g.(42 024093_42034033)_( 42138639_42140308) del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 42,024,093 | 42,034,033 | 42,138,639 | 42,140,308 |
| nssv1531830 | Remapped | Perfect | NC_000009.12:g.(42 024093_42034033)_( 42138639_42140308) dup | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 42,024,093 | 42,034,033 | 42,138,639 | 42,140,308 |
| nssv1544067 | Remapped | Perfect | NC_000009.12:g.(42 024093_42034033)_( 42138639_42140308) dup | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 42,024,093 | 42,034,033 | 42,138,639 | 42,140,308 |
| nssv1576491 | Remapped | Perfect | NC_000009.12:g.(42 024093_42034033)_( 42138639_42140308) dup | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 42,024,093 | 42,034,033 | 42,138,639 | 42,140,308 |
| nssv1589293 | Remapped | Perfect | NC_000009.12:g.(42 024093_42034033)_( 42138639_42140308) dup | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 42,024,093 | 42,034,033 | 42,138,639 | 42,140,308 |
| nssv1518073 | Remapped | Perfect | NC_000009.11:g.(43 674081_43675750)_( 43780356_43790296) del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 43,674,081 | 43,675,750 | 43,780,356 | 43,790,296 |
| nssv1522309 | Remapped | Perfect | NC_000009.11:g.(43 674081_43675750)_( 43780356_43790296) del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 43,674,081 | 43,675,750 | 43,780,356 | 43,790,296 |
| nssv1522471 | Remapped | Perfect | NC_000009.11:g.(43 674081_43675750)_( 43780356_43790296) dup | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 43,674,081 | 43,675,750 | 43,780,356 | 43,790,296 |
| nssv1524811 | Remapped | Perfect | NC_000009.11:g.(43 674081_43675750)_( 43780356_43790296) del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 43,674,081 | 43,675,750 | 43,780,356 | 43,790,296 |
| nssv1531830 | Remapped | Perfect | NC_000009.11:g.(43 674081_43675750)_( 43780356_43790296) dup | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 43,674,081 | 43,675,750 | 43,780,356 | 43,790,296 |
| nssv1544067 | Remapped | Perfect | NC_000009.11:g.(43 674081_43675750)_( 43780356_43790296) dup | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 43,674,081 | 43,675,750 | 43,780,356 | 43,790,296 |
| nssv1576491 | Remapped | Perfect | NC_000009.11:g.(43 674081_43675750)_( 43780356_43790296) dup | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 43,674,081 | 43,675,750 | 43,780,356 | 43,790,296 |
| nssv1589293 | Remapped | Perfect | NC_000009.11:g.(43 674081_43675750)_( 43780356_43790296) dup | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 43,674,081 | 43,675,750 | 43,780,356 | 43,790,296 |
| nssv1518073 | Submitted genomic | NC_000009.10:g.(43 614077_43615746)_( 43720352_43730292) del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 43,614,077 | 43,615,746 | 43,720,352 | 43,730,292 | ||
| nssv1522309 | Submitted genomic | NC_000009.10:g.(43 614077_43615746)_( 43720352_43730292) del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 43,614,077 | 43,615,746 | 43,720,352 | 43,730,292 | ||
| nssv1522471 | Submitted genomic | NC_000009.10:g.(43 614077_43615746)_( 43720352_43730292) dup | NCBI36 (hg18) | NC_000009.10 | Chr9 | 43,614,077 | 43,615,746 | 43,720,352 | 43,730,292 | ||
| nssv1524811 | Submitted genomic | NC_000009.10:g.(43 614077_43615746)_( 43720352_43730292) del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 43,614,077 | 43,615,746 | 43,720,352 | 43,730,292 | ||
| nssv1531830 | Submitted genomic | NC_000009.10:g.(43 614077_43615746)_( 43720352_43730292) dup | NCBI36 (hg18) | NC_000009.10 | Chr9 | 43,614,077 | 43,615,746 | 43,720,352 | 43,730,292 | ||
| nssv1544067 | Submitted genomic | NC_000009.10:g.(43 614077_43615746)_( 43720352_43730292) dup | NCBI36 (hg18) | NC_000009.10 | Chr9 | 43,614,077 | 43,615,746 | 43,720,352 | 43,730,292 | ||
| nssv1576491 | Submitted genomic | NC_000009.10:g.(43 614077_43615746)_( 43720352_43730292) dup | NCBI36 (hg18) | NC_000009.10 | Chr9 | 43,614,077 | 43,615,746 | 43,720,352 | 43,730,292 | ||
| nssv1589293 | Submitted genomic | NC_000009.10:g.(43 614077_43615746)_( 43720352_43730292) dup | NCBI36 (hg18) | NC_000009.10 | Chr9 | 43,614,077 | 43,615,746 | 43,720,352 | 43,730,292 |