nsv893661
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:133,882
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 450 SVs from 56 studies. See in: genome view
Overlapping variant regions from other studies: 450 SVs from 56 studies. See in: genome view
Overlapping variant regions from other studies: 148 SVs from 20 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv893661 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000009.12 | Chr9 | 103,180,107 | 103,184,173 | 103,306,683 | 103,313,988 |
| nsv893661 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000009.11 | Chr9 | 105,942,389 | 105,946,455 | 106,068,965 | 106,076,270 |
| nsv893661 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000009.10 | Chr9 | 104,982,210 | 104,986,276 | 105,108,786 | 105,116,091 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1557728 | copy number gain | MS22848 | SNP array | SNP genotyping analysis | 8 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1557728 | Remapped | Perfect | NC_000009.12:g.(10 3180107_103184173) _(103306683_103313 988)dup | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 103,180,107 | 103,184,173 | 103,306,683 | 103,313,988 |
| nssv1557728 | Remapped | Perfect | NC_000009.11:g.(10 5942389_105946455) _(106068965_106076 270)dup | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 105,942,389 | 105,946,455 | 106,068,965 | 106,076,270 |
| nssv1557728 | Submitted genomic | NC_000009.10:g.(10 4982210_104986276) _(105108786_105116 091)dup | NCBI36 (hg18) | NC_000009.10 | Chr9 | 104,982,210 | 104,986,276 | 105,108,786 | 105,116,091 |