nsv893843
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:110,197
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 383 SVs from 50 studies. See in: genome view
Overlapping variant regions from other studies: 383 SVs from 50 studies. See in: genome view
Overlapping variant regions from other studies: 135 SVs from 14 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv893843 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000009.12 | Chr9 | 125,986,122 | 125,991,955 | 126,084,891 | 126,096,318 |
| nsv893843 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000009.11 | Chr9 | 128,748,401 | 128,754,234 | 128,847,170 | 128,858,597 |
| nsv893843 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000009.10 | Chr9 | 127,788,222 | 127,794,055 | 127,886,991 | 127,898,418 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1529823 | copy number loss | MS10123 | SNP array | SNP genotyping analysis | 152 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1529823 | Remapped | Perfect | NC_000009.12:g.(12 5986122_125991955) _(126084891_126096 318)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 125,986,122 | 125,991,955 | 126,084,891 | 126,096,318 |
| nssv1529823 | Remapped | Perfect | NC_000009.11:g.(12 8748401_128754234) _(128847170_128858 597)del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 128,748,401 | 128,754,234 | 128,847,170 | 128,858,597 |
| nssv1529823 | Submitted genomic | NC_000009.10:g.(12 7788222_127794055) _(127886991_127898 418)del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 127,788,222 | 127,794,055 | 127,886,991 | 127,898,418 |