nsv894742
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:48,453
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 435 SVs from 57 studies. See in: genome view
Overlapping variant regions from other studies: 435 SVs from 57 studies. See in: genome view
Overlapping variant regions from other studies: 150 SVs from 18 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv894742 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000010.11 | Chr10 | 1,664,531 | 1,668,535 | 1,711,995 | 1,712,983 |
| nsv894742 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000010.10 | Chr10 | 1,706,725 | 1,710,729 | 1,754,189 | 1,755,177 |
| nsv894742 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000010.9 | Chr10 | 1,696,725 | 1,700,729 | 1,744,189 | 1,745,177 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1521926 | copy number loss | SP52634 | SNP array | SNP genotyping analysis | 12 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1521926 | Remapped | Perfect | NC_000010.11:g.(16 64531_1668535)_(17 11995_1712983)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 1,664,531 | 1,668,535 | 1,711,995 | 1,712,983 |
| nssv1521926 | Remapped | Perfect | NC_000010.10:g.(17 06725_1710729)_(17 54189_1755177)del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 1,706,725 | 1,710,729 | 1,754,189 | 1,755,177 |
| nssv1521926 | Submitted genomic | NC_000010.9:g.(169 6725_1700729)_(174 4189_1745177)del | NCBI36 (hg18) | NC_000010.9 | Chr10 | 1,696,725 | 1,700,729 | 1,744,189 | 1,745,177 |