nsv894746
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:176,464
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 727 SVs from 75 studies. See in: genome view
Overlapping variant regions from other studies: 727 SVs from 75 studies. See in: genome view
Overlapping variant regions from other studies: 237 SVs from 20 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv894746 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000010.11 | Chr10 | 1,930,463 | 1,932,841 | 2,101,114 | 2,106,926 |
| nsv894746 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000010.10 | Chr10 | 1,972,657 | 1,975,035 | 2,143,308 | 2,149,120 |
| nsv894746 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000010.9 | Chr10 | 1,962,657 | 1,965,035 | 2,133,308 | 2,139,120 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1521929 | copy number gain | SP52634 | SNP array | SNP genotyping analysis | 12 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1521929 | Remapped | Perfect | NC_000010.11:g.(19 30463_1932841)_(21 01114_2106926)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 1,930,463 | 1,932,841 | 2,101,114 | 2,106,926 |
| nssv1521929 | Remapped | Perfect | NC_000010.10:g.(19 72657_1975035)_(21 43308_2149120)dup | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 1,972,657 | 1,975,035 | 2,143,308 | 2,149,120 |
| nssv1521929 | Submitted genomic | NC_000010.9:g.(196 2657_1965035)_(213 3308_2139120)dup | NCBI36 (hg18) | NC_000010.9 | Chr10 | 1,962,657 | 1,965,035 | 2,133,308 | 2,139,120 |