nsv894755
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:49,318
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 369 SVs from 50 studies. See in: genome view
Overlapping variant regions from other studies: 369 SVs from 50 studies. See in: genome view
Overlapping variant regions from other studies: 173 SVs from 19 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv894755 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000010.11 | Chr10 | 2,701,141 | 2,705,001 | 2,741,132 | 2,750,458 |
| nsv894755 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000010.10 | Chr10 | 2,743,333 | 2,747,193 | 2,783,324 | 2,792,650 |
| nsv894755 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000010.9 | Chr10 | 2,733,333 | 2,737,193 | 2,773,324 | 2,782,650 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1577730 | copy number loss | IS34543 | SNP array | SNP genotyping analysis | 21 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1577730 | Remapped | Perfect | NC_000010.11:g.(27 01141_2705001)_(27 41132_2750458)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 2,701,141 | 2,705,001 | 2,741,132 | 2,750,458 |
| nssv1577730 | Remapped | Perfect | NC_000010.10:g.(27 43333_2747193)_(27 83324_2792650)del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 2,743,333 | 2,747,193 | 2,783,324 | 2,792,650 |
| nssv1577730 | Submitted genomic | NC_000010.9:g.(273 3333_2737193)_(277 3324_2782650)del | NCBI36 (hg18) | NC_000010.9 | Chr10 | 2,733,333 | 2,737,193 | 2,773,324 | 2,782,650 |