nsv894801
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:31,536
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 303 SVs from 52 studies. See in: genome view
Overlapping variant regions from other studies: 303 SVs from 52 studies. See in: genome view
Overlapping variant regions from other studies: 107 SVs from 15 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv894801 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000010.11 | Chr10 | 5,558,239 | 5,559,822 | 5,588,168 | 5,589,774 |
| nsv894801 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000010.10 | Chr10 | 5,600,202 | 5,601,785 | 5,630,131 | 5,631,737 |
| nsv894801 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000010.9 | Chr10 | 5,590,202 | 5,591,785 | 5,620,131 | 5,621,737 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1580872 | copy number loss | IS35484 | SNP array | SNP genotyping analysis | 201 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1580872 | Remapped | Perfect | NC_000010.11:g.(55 58239_5559822)_(55 88168_5589774)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 5,558,239 | 5,559,822 | 5,588,168 | 5,589,774 |
| nssv1580872 | Remapped | Perfect | NC_000010.10:g.(56 00202_5601785)_(56 30131_5631737)del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 5,600,202 | 5,601,785 | 5,630,131 | 5,631,737 |
| nssv1580872 | Submitted genomic | NC_000010.9:g.(559 0202_5591785)_(562 0131_5621737)del | NCBI36 (hg18) | NC_000010.9 | Chr10 | 5,590,202 | 5,591,785 | 5,620,131 | 5,621,737 |