nsv895032
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:71,202
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 210 SVs from 32 studies. See in: genome view
Overlapping variant regions from other studies: 210 SVs from 32 studies. See in: genome view
Overlapping variant regions from other studies: 78 SVs from 13 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv895032 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000010.11 | Chr10 | 38,138,780 | 38,141,368 | 38,197,131 | 38,209,981 |
| nsv895032 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000010.10 | Chr10 | 38,427,708 | 38,430,296 | 38,486,059 | 38,498,909 |
| nsv895032 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000010.9 | Chr10 | 38,467,714 | 38,470,302 | 38,526,065 | 38,538,915 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1552450 | copy number loss | MS19437 | SNP array | SNP genotyping analysis | 18 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1552450 | Remapped | Perfect | NC_000010.11:g.(38 138780_38141368)_( 38197131_38209981) del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 38,138,780 | 38,141,368 | 38,197,131 | 38,209,981 |
| nssv1552450 | Remapped | Perfect | NC_000010.10:g.(38 427708_38430296)_( 38486059_38498909) del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 38,427,708 | 38,430,296 | 38,486,059 | 38,498,909 |
| nssv1552450 | Submitted genomic | NC_000010.9:g.(384 67714_38470302)_(3 8526065_38538915)d el | NCBI36 (hg18) | NC_000010.9 | Chr10 | 38,467,714 | 38,470,302 | 38,526,065 | 38,538,915 |