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dbVar

Database of genomic structural variation

nsv895151

Organism: Homo sapiens

Study:nstd71 (Xu et al. 2011)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:4
Validation:Not tested
Clinical Assertions: No
Region Size:251,053

Publication(s):Xu et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 3123 SVs from 111 studies. See in: genome view

Remapped(Score: Pass):46,398,664-46,649,716

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv895151	Remapped	Pass	GRCh38.p12	Primary Assembly	First Pass	NC_000010.11	Chr10	-	46,398,664	46,649,716	46,649,716
nsv895151	Remapped	Pass	GRCh37.p13	Primary Assembly	First Pass	NC_000010.10	Chr10	-	47,006,954	47,164,700	47,171,167
nsv895151	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000010.9	Chr10	46,319,907	46,348,394	46,584,706	46,591,173

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1541859	copy number gain	MS15514	SNP array	SNP genotyping analysis	12
nssv1553601	copy number gain	MS20200	SNP array	SNP genotyping analysis	13
nssv1577737	copy number gain	IS34543	SNP array	SNP genotyping analysis	21
nssv1586336	copy number gain	IS37743	SNP array	SNP genotyping analysis	14

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1541859	Remapped	Pass	NC_000010.11:g.(?_ 46398664)_(4664971 6_46649716)dup	GRCh38.p12	First Pass	NC_000010.11	Chr10	-	46,398,664	46,649,716	46,649,716
nssv1553601	Remapped	Pass	NC_000010.11:g.(?_ 46398664)_(4664971 6_46649716)dup	GRCh38.p12	First Pass	NC_000010.11	Chr10	-	46,398,664	46,649,716	46,649,716
nssv1577737	Remapped	Pass	NC_000010.11:g.(?_ 46398664)_(4664971 6_46649716)dup	GRCh38.p12	First Pass	NC_000010.11	Chr10	-	46,398,664	46,649,716	46,649,716
nssv1586336	Remapped	Pass	NC_000010.11:g.(?_ 46398664)_(4664971 6_46649716)dup	GRCh38.p12	First Pass	NC_000010.11	Chr10	-	46,398,664	46,649,716	46,649,716
nssv1541859	Remapped	Pass	NC_000010.10:g.(?_ 47006954)_(4716470 0_47171167)dup	GRCh37.p13	First Pass	NC_000010.10	Chr10	-	47,006,954	47,164,700	47,171,167
nssv1553601	Remapped	Pass	NC_000010.10:g.(?_ 47006954)_(4716470 0_47171167)dup	GRCh37.p13	First Pass	NC_000010.10	Chr10	-	47,006,954	47,164,700	47,171,167
nssv1577737	Remapped	Pass	NC_000010.10:g.(?_ 47006954)_(4716470 0_47171167)dup	GRCh37.p13	First Pass	NC_000010.10	Chr10	-	47,006,954	47,164,700	47,171,167
nssv1586336	Remapped	Pass	NC_000010.10:g.(?_ 47006954)_(4716470 0_47171167)dup	GRCh37.p13	First Pass	NC_000010.10	Chr10	-	47,006,954	47,164,700	47,171,167
nssv1541859	Submitted genomic		NC_000010.9:g.(463 19907_46348394)_(4 6584706_46591173)d up	NCBI36 (hg18)		NC_000010.9	Chr10	46,319,907	46,348,394	46,584,706	46,591,173
nssv1553601	Submitted genomic		NC_000010.9:g.(463 19907_46348394)_(4 6584706_46591173)d up	NCBI36 (hg18)		NC_000010.9	Chr10	46,319,907	46,348,394	46,584,706	46,591,173
nssv1577737	Submitted genomic		NC_000010.9:g.(463 19907_46348394)_(4 6584706_46591173)d up	NCBI36 (hg18)		NC_000010.9	Chr10	46,319,907	46,348,394	46,584,706	46,591,173
nssv1586336	Submitted genomic		NC_000010.9:g.(463 19907_46348394)_(4 6584706_46591173)d up	NCBI36 (hg18)		NC_000010.9	Chr10	46,319,907	46,348,394	46,584,706	46,591,173

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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