nsv895151
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:4
- Validation:Not tested
- Clinical Assertions: No
- Region Size:251,053
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 3123 SVs from 111 studies. See in: genome view
Overlapping variant regions from other studies: 2850 SVs from 104 studies. See in: genome view
Overlapping variant regions from other studies: 1733 SVs from 33 studies. See in: genome view
Variant Region Placement Information
Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
---|---|---|---|---|---|---|---|---|---|---|---|
nsv895151 | Remapped | Pass | GRCh38.p12 | Primary Assembly | First Pass | NC_000010.11 | Chr10 | - | 46,398,664 | 46,649,716 | 46,649,716 |
nsv895151 | Remapped | Pass | GRCh37.p13 | Primary Assembly | First Pass | NC_000010.10 | Chr10 | - | 47,006,954 | 47,164,700 | 47,171,167 |
nsv895151 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000010.9 | Chr10 | 46,319,907 | 46,348,394 | 46,584,706 | 46,591,173 |
Variant Call Information
Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
---|---|---|---|---|---|
nssv1541859 | copy number gain | MS15514 | SNP array | SNP genotyping analysis | 12 |
nssv1553601 | copy number gain | MS20200 | SNP array | SNP genotyping analysis | 13 |
nssv1577737 | copy number gain | IS34543 | SNP array | SNP genotyping analysis | 21 |
nssv1586336 | copy number gain | IS37743 | SNP array | SNP genotyping analysis | 14 |
Variant Call Placement Information
Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
---|---|---|---|---|---|---|---|---|---|---|---|
nssv1541859 | Remapped | Pass | NC_000010.11:g.(?_ 46398664)_(4664971 6_46649716)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | - | 46,398,664 | 46,649,716 | 46,649,716 |
nssv1553601 | Remapped | Pass | NC_000010.11:g.(?_ 46398664)_(4664971 6_46649716)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | - | 46,398,664 | 46,649,716 | 46,649,716 |
nssv1577737 | Remapped | Pass | NC_000010.11:g.(?_ 46398664)_(4664971 6_46649716)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | - | 46,398,664 | 46,649,716 | 46,649,716 |
nssv1586336 | Remapped | Pass | NC_000010.11:g.(?_ 46398664)_(4664971 6_46649716)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | - | 46,398,664 | 46,649,716 | 46,649,716 |
nssv1541859 | Remapped | Pass | NC_000010.10:g.(?_ 47006954)_(4716470 0_47171167)dup | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | - | 47,006,954 | 47,164,700 | 47,171,167 |
nssv1553601 | Remapped | Pass | NC_000010.10:g.(?_ 47006954)_(4716470 0_47171167)dup | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | - | 47,006,954 | 47,164,700 | 47,171,167 |
nssv1577737 | Remapped | Pass | NC_000010.10:g.(?_ 47006954)_(4716470 0_47171167)dup | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | - | 47,006,954 | 47,164,700 | 47,171,167 |
nssv1586336 | Remapped | Pass | NC_000010.10:g.(?_ 47006954)_(4716470 0_47171167)dup | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | - | 47,006,954 | 47,164,700 | 47,171,167 |
nssv1541859 | Submitted genomic | NC_000010.9:g.(463 19907_46348394)_(4 6584706_46591173)d up | NCBI36 (hg18) | NC_000010.9 | Chr10 | 46,319,907 | 46,348,394 | 46,584,706 | 46,591,173 | ||
nssv1553601 | Submitted genomic | NC_000010.9:g.(463 19907_46348394)_(4 6584706_46591173)d up | NCBI36 (hg18) | NC_000010.9 | Chr10 | 46,319,907 | 46,348,394 | 46,584,706 | 46,591,173 | ||
nssv1577737 | Submitted genomic | NC_000010.9:g.(463 19907_46348394)_(4 6584706_46591173)d up | NCBI36 (hg18) | NC_000010.9 | Chr10 | 46,319,907 | 46,348,394 | 46,584,706 | 46,591,173 | ||
nssv1586336 | Submitted genomic | NC_000010.9:g.(463 19907_46348394)_(4 6584706_46591173)d up | NCBI36 (hg18) | NC_000010.9 | Chr10 | 46,319,907 | 46,348,394 | 46,584,706 | 46,591,173 |