nsv895236
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:17
- Validation:Not tested
- Clinical Assertions: No
- Region Size:1,581,215
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 7178 SVs from 129 studies. See in: genome view
Overlapping variant regions from other studies: 3190 SVs from 112 studies. See in: genome view
Overlapping variant regions from other studies: 4307 SVs from 75 studies. See in: genome view
Overlapping variant regions from other studies: 1557 SVs from 34 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv895236 | Remapped | Pass | GRCh38.p12 | Primary Assembly | First Pass | NC_000010.11 | Chr10 | 46,157,935 | 47,720,438 | 47,739,149 | - |
| nsv895236 | Remapped | Pass | GRCh37.p13 | Primary Assembly | First Pass | NC_000010.10 | Chr10 | - | 47,529,170 | 47,934,082 | 47,934,082 |
| nsv895236 | Remapped | Pass | GRCh37.p13 | PATCHES | First Pass | NW_003871068.1 | Chr10|NW_0 03871068.1 | 431,049 | 1,991,553 | 2,010,264 | - |
| nsv895236 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000010.9 | Chr10 | 46,830,464 | 47,007,374 | 47,218,918 | 47,454,088 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1521598 | copy number gain | SP52454 | SNP array | SNP genotyping analysis | 8 |
| nssv1527483 | copy number gain | SP58450 | SNP array | SNP genotyping analysis | 10 |
| nssv1530370 | copy number gain | MS10301 | SNP array | SNP genotyping analysis | 12 |
| nssv1533724 | copy number gain | MS11300 | SNP array | SNP genotyping analysis | 9 |
| nssv1537194 | copy number gain | MS13095 | SNP array | SNP genotyping analysis | 158 |
| nssv1539090 | copy number gain | MS14147 | SNP array | SNP genotyping analysis | 7 |
| nssv1540109 | copy number gain | MS14684 | SNP array | SNP genotyping analysis | 12 |
| nssv1540287 | copy number gain | MS14779 | SNP array | SNP genotyping analysis | 17 |
| nssv1543255 | copy number gain | MS16122 | SNP array | SNP genotyping analysis | 15 |
| nssv1560841 | copy number gain | MS24732 | SNP array | SNP genotyping analysis | 9 |
| nssv1567918 | copy number gain | IS31172 | SNP array | SNP genotyping analysis | 9 |
| nssv1568406 | copy number gain | IS31282 | SNP array | SNP genotyping analysis | 21 |
| nssv1575635 | copy number gain | IS33786 | SNP array | SNP genotyping analysis | 29 |
| nssv1577738 | copy number gain | IS34543 | SNP array | SNP genotyping analysis | 21 |
| nssv1578465 | copy number gain | IS34782 | SNP array | SNP genotyping analysis | 10 |
| nssv1595239 | copy number gain | IS40188 | SNP array | SNP genotyping analysis | 12 |
| nssv1596016 | copy number gain | IS40387 | SNP array | SNP genotyping analysis | 14 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1521598 | Remapped | Pass | NC_000010.11:g.(46 157935_47720438)_( 47739149_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 46,157,935 | 47,720,438 | 47,739,149 | - |
| nssv1527483 | Remapped | Pass | NC_000010.11:g.(46 157935_47720438)_( 47739149_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 46,157,935 | 47,720,438 | 47,739,149 | - |
| nssv1530370 | Remapped | Pass | NC_000010.11:g.(46 157935_47720438)_( 47739149_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 46,157,935 | 47,720,438 | 47,739,149 | - |
| nssv1533724 | Remapped | Pass | NC_000010.11:g.(46 157935_47720438)_( 47739149_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 46,157,935 | 47,720,438 | 47,739,149 | - |
| nssv1537194 | Remapped | Pass | NC_000010.11:g.(46 157935_47720438)_( 47739149_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 46,157,935 | 47,720,438 | 47,739,149 | - |
| nssv1539090 | Remapped | Pass | NC_000010.11:g.(46 157935_47720438)_( 47739149_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 46,157,935 | 47,720,438 | 47,739,149 | - |
| nssv1540109 | Remapped | Pass | NC_000010.11:g.(46 157935_47720438)_( 47739149_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 46,157,935 | 47,720,438 | 47,739,149 | - |
| nssv1540287 | Remapped | Pass | NC_000010.11:g.(46 157935_47720438)_( 47739149_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 46,157,935 | 47,720,438 | 47,739,149 | - |
| nssv1543255 | Remapped | Pass | NC_000010.11:g.(46 157935_47720438)_( 47739149_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 46,157,935 | 47,720,438 | 47,739,149 | - |
| nssv1560841 | Remapped | Pass | NC_000010.11:g.(46 157935_47720438)_( 47739149_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 46,157,935 | 47,720,438 | 47,739,149 | - |
| nssv1567918 | Remapped | Pass | NC_000010.11:g.(46 157935_47720438)_( 47739149_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 46,157,935 | 47,720,438 | 47,739,149 | - |
| nssv1568406 | Remapped | Pass | NC_000010.11:g.(46 157935_47720438)_( 47739149_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 46,157,935 | 47,720,438 | 47,739,149 | - |
| nssv1575635 | Remapped | Pass | NC_000010.11:g.(46 157935_47720438)_( 47739149_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 46,157,935 | 47,720,438 | 47,739,149 | - |
| nssv1577738 | Remapped | Pass | NC_000010.11:g.(46 157935_47720438)_( 47739149_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 46,157,935 | 47,720,438 | 47,739,149 | - |
| nssv1578465 | Remapped | Pass | NC_000010.11:g.(46 157935_47720438)_( 47739149_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 46,157,935 | 47,720,438 | 47,739,149 | - |
| nssv1595239 | Remapped | Pass | NC_000010.11:g.(46 157935_47720438)_( 47739149_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 46,157,935 | 47,720,438 | 47,739,149 | - |
| nssv1596016 | Remapped | Pass | NC_000010.11:g.(46 157935_47720438)_( 47739149_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 46,157,935 | 47,720,438 | 47,739,149 | - |
| nssv1521598 | Remapped | Pass | NW_003871068.1:g.( 431049_1991553)_(2 010264_?)dup | GRCh37.p13 | First Pass | NW_003871068.1 | Chr10|NW_0 03871068.1 | 431,049 | 1,991,553 | 2,010,264 | - |
| nssv1527483 | Remapped | Pass | NW_003871068.1:g.( 431049_1991553)_(2 010264_?)dup | GRCh37.p13 | First Pass | NW_003871068.1 | Chr10|NW_0 03871068.1 | 431,049 | 1,991,553 | 2,010,264 | - |
| nssv1530370 | Remapped | Pass | NW_003871068.1:g.( 431049_1991553)_(2 010264_?)dup | GRCh37.p13 | First Pass | NW_003871068.1 | Chr10|NW_0 03871068.1 | 431,049 | 1,991,553 | 2,010,264 | - |
| nssv1533724 | Remapped | Pass | NW_003871068.1:g.( 431049_1991553)_(2 010264_?)dup | GRCh37.p13 | First Pass | NW_003871068.1 | Chr10|NW_0 03871068.1 | 431,049 | 1,991,553 | 2,010,264 | - |
| nssv1537194 | Remapped | Pass | NW_003871068.1:g.( 431049_1991553)_(2 010264_?)dup | GRCh37.p13 | First Pass | NW_003871068.1 | Chr10|NW_0 03871068.1 | 431,049 | 1,991,553 | 2,010,264 | - |
| nssv1539090 | Remapped | Pass | NW_003871068.1:g.( 431049_1991553)_(2 010264_?)dup | GRCh37.p13 | First Pass | NW_003871068.1 | Chr10|NW_0 03871068.1 | 431,049 | 1,991,553 | 2,010,264 | - |
| nssv1540109 | Remapped | Pass | NW_003871068.1:g.( 431049_1991553)_(2 010264_?)dup | GRCh37.p13 | First Pass | NW_003871068.1 | Chr10|NW_0 03871068.1 | 431,049 | 1,991,553 | 2,010,264 | - |
| nssv1540287 | Remapped | Pass | NW_003871068.1:g.( 431049_1991553)_(2 010264_?)dup | GRCh37.p13 | First Pass | NW_003871068.1 | Chr10|NW_0 03871068.1 | 431,049 | 1,991,553 | 2,010,264 | - |
| nssv1543255 | Remapped | Pass | NW_003871068.1:g.( 431049_1991553)_(2 010264_?)dup | GRCh37.p13 | First Pass | NW_003871068.1 | Chr10|NW_0 03871068.1 | 431,049 | 1,991,553 | 2,010,264 | - |
| nssv1560841 | Remapped | Pass | NW_003871068.1:g.( 431049_1991553)_(2 010264_?)dup | GRCh37.p13 | First Pass | NW_003871068.1 | Chr10|NW_0 03871068.1 | 431,049 | 1,991,553 | 2,010,264 | - |
| nssv1567918 | Remapped | Pass | NW_003871068.1:g.( 431049_1991553)_(2 010264_?)dup | GRCh37.p13 | First Pass | NW_003871068.1 | Chr10|NW_0 03871068.1 | 431,049 | 1,991,553 | 2,010,264 | - |
| nssv1568406 | Remapped | Pass | NW_003871068.1:g.( 431049_1991553)_(2 010264_?)dup | GRCh37.p13 | First Pass | NW_003871068.1 | Chr10|NW_0 03871068.1 | 431,049 | 1,991,553 | 2,010,264 | - |
| nssv1575635 | Remapped | Pass | NW_003871068.1:g.( 431049_1991553)_(2 010264_?)dup | GRCh37.p13 | First Pass | NW_003871068.1 | Chr10|NW_0 03871068.1 | 431,049 | 1,991,553 | 2,010,264 | - |
| nssv1577738 | Remapped | Pass | NW_003871068.1:g.( 431049_1991553)_(2 010264_?)dup | GRCh37.p13 | First Pass | NW_003871068.1 | Chr10|NW_0 03871068.1 | 431,049 | 1,991,553 | 2,010,264 | - |
| nssv1578465 | Remapped | Pass | NW_003871068.1:g.( 431049_1991553)_(2 010264_?)dup | GRCh37.p13 | First Pass | NW_003871068.1 | Chr10|NW_0 03871068.1 | 431,049 | 1,991,553 | 2,010,264 | - |
| nssv1595239 | Remapped | Pass | NW_003871068.1:g.( 431049_1991553)_(2 010264_?)dup | GRCh37.p13 | First Pass | NW_003871068.1 | Chr10|NW_0 03871068.1 | 431,049 | 1,991,553 | 2,010,264 | - |
| nssv1596016 | Remapped | Pass | NW_003871068.1:g.( 431049_1991553)_(2 010264_?)dup | GRCh37.p13 | First Pass | NW_003871068.1 | Chr10|NW_0 03871068.1 | 431,049 | 1,991,553 | 2,010,264 | - |
| nssv1521598 | Remapped | Pass | NC_000010.10:g.(?_ 47529170)_(4793408 2_47934082)dup | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | - | 47,529,170 | 47,934,082 | 47,934,082 |
| nssv1527483 | Remapped | Pass | NC_000010.10:g.(?_ 47529170)_(4793408 2_47934082)dup | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | - | 47,529,170 | 47,934,082 | 47,934,082 |
| nssv1530370 | Remapped | Pass | NC_000010.10:g.(?_ 47529170)_(4793408 2_47934082)dup | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | - | 47,529,170 | 47,934,082 | 47,934,082 |
| nssv1533724 | Remapped | Pass | NC_000010.10:g.(?_ 47529170)_(4793408 2_47934082)dup | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | - | 47,529,170 | 47,934,082 | 47,934,082 |
| nssv1537194 | Remapped | Pass | NC_000010.10:g.(?_ 47529170)_(4793408 2_47934082)dup | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | - | 47,529,170 | 47,934,082 | 47,934,082 |
| nssv1539090 | Remapped | Pass | NC_000010.10:g.(?_ 47529170)_(4793408 2_47934082)dup | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | - | 47,529,170 | 47,934,082 | 47,934,082 |
| nssv1540109 | Remapped | Pass | NC_000010.10:g.(?_ 47529170)_(4793408 2_47934082)dup | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | - | 47,529,170 | 47,934,082 | 47,934,082 |
| nssv1540287 | Remapped | Pass | NC_000010.10:g.(?_ 47529170)_(4793408 2_47934082)dup | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | - | 47,529,170 | 47,934,082 | 47,934,082 |
| nssv1543255 | Remapped | Pass | NC_000010.10:g.(?_ 47529170)_(4793408 2_47934082)dup | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | - | 47,529,170 | 47,934,082 | 47,934,082 |
| nssv1560841 | Remapped | Pass | NC_000010.10:g.(?_ 47529170)_(4793408 2_47934082)dup | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | - | 47,529,170 | 47,934,082 | 47,934,082 |
| nssv1567918 | Remapped | Pass | NC_000010.10:g.(?_ 47529170)_(4793408 2_47934082)dup | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | - | 47,529,170 | 47,934,082 | 47,934,082 |
| nssv1568406 | Remapped | Pass | NC_000010.10:g.(?_ 47529170)_(4793408 2_47934082)dup | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | - | 47,529,170 | 47,934,082 | 47,934,082 |
| nssv1575635 | Remapped | Pass | NC_000010.10:g.(?_ 47529170)_(4793408 2_47934082)dup | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | - | 47,529,170 | 47,934,082 | 47,934,082 |
| nssv1577738 | Remapped | Pass | NC_000010.10:g.(?_ 47529170)_(4793408 2_47934082)dup | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | - | 47,529,170 | 47,934,082 | 47,934,082 |
| nssv1578465 | Remapped | Pass | NC_000010.10:g.(?_ 47529170)_(4793408 2_47934082)dup | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | - | 47,529,170 | 47,934,082 | 47,934,082 |
| nssv1595239 | Remapped | Pass | NC_000010.10:g.(?_ 47529170)_(4793408 2_47934082)dup | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | - | 47,529,170 | 47,934,082 | 47,934,082 |
| nssv1596016 | Remapped | Pass | NC_000010.10:g.(?_ 47529170)_(4793408 2_47934082)dup | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | - | 47,529,170 | 47,934,082 | 47,934,082 |
| nssv1521598 | Submitted genomic | NC_000010.9:g.(468 30464_47007374)_(4 7218918_47454088)d up | NCBI36 (hg18) | NC_000010.9 | Chr10 | 46,830,464 | 47,007,374 | 47,218,918 | 47,454,088 | ||
| nssv1527483 | Submitted genomic | NC_000010.9:g.(468 30464_47007374)_(4 7218918_47454088)d up | NCBI36 (hg18) | NC_000010.9 | Chr10 | 46,830,464 | 47,007,374 | 47,218,918 | 47,454,088 | ||
| nssv1530370 | Submitted genomic | NC_000010.9:g.(468 30464_47007374)_(4 7218918_47454088)d up | NCBI36 (hg18) | NC_000010.9 | Chr10 | 46,830,464 | 47,007,374 | 47,218,918 | 47,454,088 | ||
| nssv1533724 | Submitted genomic | NC_000010.9:g.(468 30464_47007374)_(4 7218918_47454088)d up | NCBI36 (hg18) | NC_000010.9 | Chr10 | 46,830,464 | 47,007,374 | 47,218,918 | 47,454,088 | ||
| nssv1537194 | Submitted genomic | NC_000010.9:g.(468 30464_47007374)_(4 7218918_47454088)d up | NCBI36 (hg18) | NC_000010.9 | Chr10 | 46,830,464 | 47,007,374 | 47,218,918 | 47,454,088 | ||
| nssv1539090 | Submitted genomic | NC_000010.9:g.(468 30464_47007374)_(4 7218918_47454088)d up | NCBI36 (hg18) | NC_000010.9 | Chr10 | 46,830,464 | 47,007,374 | 47,218,918 | 47,454,088 | ||
| nssv1540109 | Submitted genomic | NC_000010.9:g.(468 30464_47007374)_(4 7218918_47454088)d up | NCBI36 (hg18) | NC_000010.9 | Chr10 | 46,830,464 | 47,007,374 | 47,218,918 | 47,454,088 | ||
| nssv1540287 | Submitted genomic | NC_000010.9:g.(468 30464_47007374)_(4 7218918_47454088)d up | NCBI36 (hg18) | NC_000010.9 | Chr10 | 46,830,464 | 47,007,374 | 47,218,918 | 47,454,088 | ||
| nssv1543255 | Submitted genomic | NC_000010.9:g.(468 30464_47007374)_(4 7218918_47454088)d up | NCBI36 (hg18) | NC_000010.9 | Chr10 | 46,830,464 | 47,007,374 | 47,218,918 | 47,454,088 | ||
| nssv1560841 | Submitted genomic | NC_000010.9:g.(468 30464_47007374)_(4 7218918_47454088)d up | NCBI36 (hg18) | NC_000010.9 | Chr10 | 46,830,464 | 47,007,374 | 47,218,918 | 47,454,088 | ||
| nssv1567918 | Submitted genomic | NC_000010.9:g.(468 30464_47007374)_(4 7218918_47454088)d up | NCBI36 (hg18) | NC_000010.9 | Chr10 | 46,830,464 | 47,007,374 | 47,218,918 | 47,454,088 | ||
| nssv1568406 | Submitted genomic | NC_000010.9:g.(468 30464_47007374)_(4 7218918_47454088)d up | NCBI36 (hg18) | NC_000010.9 | Chr10 | 46,830,464 | 47,007,374 | 47,218,918 | 47,454,088 | ||
| nssv1575635 | Submitted genomic | NC_000010.9:g.(468 30464_47007374)_(4 7218918_47454088)d up | NCBI36 (hg18) | NC_000010.9 | Chr10 | 46,830,464 | 47,007,374 | 47,218,918 | 47,454,088 | ||
| nssv1577738 | Submitted genomic | NC_000010.9:g.(468 30464_47007374)_(4 7218918_47454088)d up | NCBI36 (hg18) | NC_000010.9 | Chr10 | 46,830,464 | 47,007,374 | 47,218,918 | 47,454,088 | ||
| nssv1578465 | Submitted genomic | NC_000010.9:g.(468 30464_47007374)_(4 7218918_47454088)d up | NCBI36 (hg18) | NC_000010.9 | Chr10 | 46,830,464 | 47,007,374 | 47,218,918 | 47,454,088 | ||
| nssv1595239 | Submitted genomic | NC_000010.9:g.(468 30464_47007374)_(4 7218918_47454088)d up | NCBI36 (hg18) | NC_000010.9 | Chr10 | 46,830,464 | 47,007,374 | 47,218,918 | 47,454,088 | ||
| nssv1596016 | Submitted genomic | NC_000010.9:g.(468 30464_47007374)_(4 7218918_47454088)d up | NCBI36 (hg18) | NC_000010.9 | Chr10 | 46,830,464 | 47,007,374 | 47,218,918 | 47,454,088 |