nsv895455
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:657,044
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 2443 SVs from 104 studies. See in: genome view
Overlapping variant regions from other studies: 2443 SVs from 104 studies. See in: genome view
Overlapping variant regions from other studies: 802 SVs from 33 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv895455 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000010.11 | Chr10 | 54,879,159 | 54,883,058 | 55,532,700 | 55,536,202 |
| nsv895455 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000010.10 | Chr10 | 56,638,919 | 56,642,818 | 57,292,460 | 57,295,962 |
| nsv895455 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000010.9 | Chr10 | 56,308,925 | 56,312,824 | 56,962,466 | 56,965,968 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1554793 | copy number loss | MS20997 | SNP array | SNP genotyping analysis | 15 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1554793 | Remapped | Perfect | NC_000010.11:g.(54 879159_54883058)_( 55532700_55536202) del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 54,879,159 | 54,883,058 | 55,532,700 | 55,536,202 |
| nssv1554793 | Remapped | Perfect | NC_000010.10:g.(56 638919_56642818)_( 57292460_57295962) del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 56,638,919 | 56,642,818 | 57,292,460 | 57,295,962 |
| nssv1554793 | Submitted genomic | NC_000010.9:g.(563 08925_56312824)_(5 6962466_56965968)d el | NCBI36 (hg18) | NC_000010.9 | Chr10 | 56,308,925 | 56,312,824 | 56,962,466 | 56,965,968 |