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dbVar

Database of genomic structural variation

nsv895544

Organism: Homo sapiens

Study:nstd71 (Xu et al. 2011)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:3
Validation:Not tested
Clinical Assertions: No
Region Size:344,429

Publication(s):Xu et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 1431 SVs from 93 studies. See in: genome view

Remapped(Score: Perfect):57,178,792-57,523,220

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv895544	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000010.11	Chr10	57,178,792	57,185,960	57,512,804	57,523,220
nsv895544	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000010.10	Chr10	58,938,552	58,945,720	59,272,564	59,282,980
nsv895544	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000010.9	Chr10	58,608,558	58,615,726	58,942,570	58,952,986

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1565392	copy number loss	IS30409	SNP array	SNP genotyping analysis	21
nssv1581931	copy number loss	IS35768	SNP array	SNP genotyping analysis	17
nssv1599711	copy number loss	IS41774	SNP array	SNP genotyping analysis	8

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1565392	Remapped	Perfect	NC_000010.11:g.(57 178792_57185960)_( 57512804_57523220) del	GRCh38.p12	First Pass	NC_000010.11	Chr10	57,178,792	57,185,960	57,512,804	57,523,220
nssv1581931	Remapped	Perfect	NC_000010.11:g.(57 178792_57185960)_( 57512804_57523220) del	GRCh38.p12	First Pass	NC_000010.11	Chr10	57,178,792	57,185,960	57,512,804	57,523,220
nssv1599711	Remapped	Perfect	NC_000010.11:g.(57 178792_57185960)_( 57512804_57523220) del	GRCh38.p12	First Pass	NC_000010.11	Chr10	57,178,792	57,185,960	57,512,804	57,523,220
nssv1565392	Remapped	Perfect	NC_000010.10:g.(58 938552_58945720)_( 59272564_59282980) del	GRCh37.p13	First Pass	NC_000010.10	Chr10	58,938,552	58,945,720	59,272,564	59,282,980
nssv1581931	Remapped	Perfect	NC_000010.10:g.(58 938552_58945720)_( 59272564_59282980) del	GRCh37.p13	First Pass	NC_000010.10	Chr10	58,938,552	58,945,720	59,272,564	59,282,980
nssv1599711	Remapped	Perfect	NC_000010.10:g.(58 938552_58945720)_( 59272564_59282980) del	GRCh37.p13	First Pass	NC_000010.10	Chr10	58,938,552	58,945,720	59,272,564	59,282,980
nssv1565392	Submitted genomic		NC_000010.9:g.(586 08558_58615726)_(5 8942570_58952986)d el	NCBI36 (hg18)		NC_000010.9	Chr10	58,608,558	58,615,726	58,942,570	58,952,986
nssv1581931	Submitted genomic		NC_000010.9:g.(586 08558_58615726)_(5 8942570_58952986)d el	NCBI36 (hg18)		NC_000010.9	Chr10	58,608,558	58,615,726	58,942,570	58,952,986
nssv1599711	Submitted genomic		NC_000010.9:g.(586 08558_58615726)_(5 8942570_58952986)d el	NCBI36 (hg18)		NC_000010.9	Chr10	58,608,558	58,615,726	58,942,570	58,952,986

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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