nsv895609
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:77,050
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 694 SVs from 66 studies. See in: genome view
Overlapping variant regions from other studies: 694 SVs from 66 studies. See in: genome view
Overlapping variant regions from other studies: 200 SVs from 20 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv895609 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000010.11 | Chr10 | 66,399,894 | 66,404,686 | 66,465,252 | 66,476,943 |
| nsv895609 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000010.10 | Chr10 | 68,159,652 | 68,164,444 | 68,225,010 | 68,236,701 |
| nsv895609 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000010.9 | Chr10 | 67,829,658 | 67,834,450 | 67,895,016 | 67,906,707 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1588045 | copy number loss | IS38148 | SNP array | SNP genotyping analysis | 24 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1588045 | Remapped | Perfect | NC_000010.11:g.(66 399894_66404686)_( 66465252_66476943) del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 66,399,894 | 66,404,686 | 66,465,252 | 66,476,943 |
| nssv1588045 | Remapped | Perfect | NC_000010.10:g.(68 159652_68164444)_( 68225010_68236701) del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 68,159,652 | 68,164,444 | 68,225,010 | 68,236,701 |
| nssv1588045 | Submitted genomic | NC_000010.9:g.(678 29658_67834450)_(6 7895016_67906707)d el | NCBI36 (hg18) | NC_000010.9 | Chr10 | 67,829,658 | 67,834,450 | 67,895,016 | 67,906,707 |