nsv895638
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:63,367
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1218 SVs from 76 studies. See in: genome view
Overlapping variant regions from other studies: 1218 SVs from 76 studies. See in: genome view
Overlapping variant regions from other studies: 259 SVs from 23 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv895638 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000010.11 | Chr10 | 66,547,056 | 66,557,325 | 66,604,282 | 66,610,422 |
| nsv895638 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000010.10 | Chr10 | 68,306,814 | 68,317,083 | 68,364,040 | 68,370,180 |
| nsv895638 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000010.9 | Chr10 | 67,976,820 | 67,987,089 | 68,034,046 | 68,040,186 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1540958 | copy number loss | MS15102 | SNP array | SNP genotyping analysis | 6 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1540958 | Remapped | Perfect | NC_000010.11:g.(66 547056_66557325)_( 66604282_66610422) del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 66,547,056 | 66,557,325 | 66,604,282 | 66,610,422 |
| nssv1540958 | Remapped | Perfect | NC_000010.10:g.(68 306814_68317083)_( 68364040_68370180) del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 68,306,814 | 68,317,083 | 68,364,040 | 68,370,180 |
| nssv1540958 | Submitted genomic | NC_000010.9:g.(679 76820_67987089)_(6 8034046_68040186)d el | NCBI36 (hg18) | NC_000010.9 | Chr10 | 67,976,820 | 67,987,089 | 68,034,046 | 68,040,186 |