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dbVar

Database of genomic structural variation

nsv895824

Organism: Homo sapiens

Study:nstd71 (Xu et al. 2011)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:3
Validation:Not tested
Clinical Assertions: No
Region Size:76,796

Publication(s):Xu et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 391 SVs from 55 studies. See in: genome view

Remapped(Score: Perfect):83,379,386-83,456,181

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv895824	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000010.11	Chr10	83,379,386	83,394,530	83,453,609	83,456,181
nsv895824	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000010.10	Chr10	85,139,142	85,154,286	85,213,365	85,215,937
nsv895824	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000010.9	Chr10	85,129,122	85,144,266	85,203,345	85,205,917

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1525719	copy number loss	SP56783	SNP array	SNP genotyping analysis	10
nssv1528338	copy number loss	SP81198	SNP array	SNP genotyping analysis	7
nssv1550742	copy number loss	MS18588	SNP array	SNP genotyping analysis	9

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1525719	Remapped	Perfect	NC_000010.11:g.(83 379386_83394530)_( 83453609_83456181) del	GRCh38.p12	First Pass	NC_000010.11	Chr10	83,379,386	83,394,530	83,453,609	83,456,181
nssv1528338	Remapped	Perfect	NC_000010.11:g.(83 379386_83394530)_( 83453609_83456181) del	GRCh38.p12	First Pass	NC_000010.11	Chr10	83,379,386	83,394,530	83,453,609	83,456,181
nssv1550742	Remapped	Perfect	NC_000010.11:g.(83 379386_83394530)_( 83453609_83456181) del	GRCh38.p12	First Pass	NC_000010.11	Chr10	83,379,386	83,394,530	83,453,609	83,456,181
nssv1525719	Remapped	Perfect	NC_000010.10:g.(85 139142_85154286)_( 85213365_85215937) del	GRCh37.p13	First Pass	NC_000010.10	Chr10	85,139,142	85,154,286	85,213,365	85,215,937
nssv1528338	Remapped	Perfect	NC_000010.10:g.(85 139142_85154286)_( 85213365_85215937) del	GRCh37.p13	First Pass	NC_000010.10	Chr10	85,139,142	85,154,286	85,213,365	85,215,937
nssv1550742	Remapped	Perfect	NC_000010.10:g.(85 139142_85154286)_( 85213365_85215937) del	GRCh37.p13	First Pass	NC_000010.10	Chr10	85,139,142	85,154,286	85,213,365	85,215,937
nssv1525719	Submitted genomic		NC_000010.9:g.(851 29122_85144266)_(8 5203345_85205917)d el	NCBI36 (hg18)		NC_000010.9	Chr10	85,129,122	85,144,266	85,203,345	85,205,917
nssv1528338	Submitted genomic		NC_000010.9:g.(851 29122_85144266)_(8 5203345_85205917)d el	NCBI36 (hg18)		NC_000010.9	Chr10	85,129,122	85,144,266	85,203,345	85,205,917
nssv1550742	Submitted genomic		NC_000010.9:g.(851 29122_85144266)_(8 5203345_85205917)d el	NCBI36 (hg18)		NC_000010.9	Chr10	85,129,122	85,144,266	85,203,345	85,205,917

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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