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dbVar

Database of genomic structural variation

nsv895920

Organism: Homo sapiens

Study:nstd71 (Xu et al. 2011)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:6
Validation:Not tested
Clinical Assertions: No
Region Size:40,890

Publication(s):Xu et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 251 SVs from 45 studies. See in: genome view

Remapped(Score: Perfect):99,787,285-99,828,174

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv895920	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000010.11	Chr10	99,787,285	99,788,420	99,817,366	99,828,174
nsv895920	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000010.10	Chr10	101,547,042	101,548,177	101,577,123	101,587,931
nsv895920	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000010.9	Chr10	101,537,032	101,538,167	101,567,113	101,577,921

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1552667	copy number loss	MS19582	SNP array	SNP genotyping analysis	12
nssv1556264	copy number loss	MS21868	SNP array	SNP genotyping analysis	44
nssv1563897	copy number loss	IS30127	SNP array	SNP genotyping analysis	19
nssv1581722	copy number loss	IS35701	SNP array	SNP genotyping analysis	38
nssv1585737	copy number loss	IS37639	SNP array	SNP genotyping analysis	30
nssv1598677	copy number loss	IS40902	SNP array	SNP genotyping analysis	34

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1552667	Remapped	Perfect	NC_000010.11:g.(99 787285_99788420)_( 99817366_99828174) del	GRCh38.p12	First Pass	NC_000010.11	Chr10	99,787,285	99,788,420	99,817,366	99,828,174
nssv1556264	Remapped	Perfect	NC_000010.11:g.(99 787285_99788420)_( 99817366_99828174) del	GRCh38.p12	First Pass	NC_000010.11	Chr10	99,787,285	99,788,420	99,817,366	99,828,174
nssv1563897	Remapped	Perfect	NC_000010.11:g.(99 787285_99788420)_( 99817366_99828174) del	GRCh38.p12	First Pass	NC_000010.11	Chr10	99,787,285	99,788,420	99,817,366	99,828,174
nssv1581722	Remapped	Perfect	NC_000010.11:g.(99 787285_99788420)_( 99817366_99828174) del	GRCh38.p12	First Pass	NC_000010.11	Chr10	99,787,285	99,788,420	99,817,366	99,828,174
nssv1585737	Remapped	Perfect	NC_000010.11:g.(99 787285_99788420)_( 99817366_99828174) del	GRCh38.p12	First Pass	NC_000010.11	Chr10	99,787,285	99,788,420	99,817,366	99,828,174
nssv1598677	Remapped	Perfect	NC_000010.11:g.(99 787285_99788420)_( 99817366_99828174) del	GRCh38.p12	First Pass	NC_000010.11	Chr10	99,787,285	99,788,420	99,817,366	99,828,174
nssv1552667	Remapped	Perfect	NC_000010.10:g.(10 1547042_101548177) _(101577123_101587 931)del	GRCh37.p13	First Pass	NC_000010.10	Chr10	101,547,042	101,548,177	101,577,123	101,587,931
nssv1556264	Remapped	Perfect	NC_000010.10:g.(10 1547042_101548177) _(101577123_101587 931)del	GRCh37.p13	First Pass	NC_000010.10	Chr10	101,547,042	101,548,177	101,577,123	101,587,931
nssv1563897	Remapped	Perfect	NC_000010.10:g.(10 1547042_101548177) _(101577123_101587 931)del	GRCh37.p13	First Pass	NC_000010.10	Chr10	101,547,042	101,548,177	101,577,123	101,587,931
nssv1581722	Remapped	Perfect	NC_000010.10:g.(10 1547042_101548177) _(101577123_101587 931)del	GRCh37.p13	First Pass	NC_000010.10	Chr10	101,547,042	101,548,177	101,577,123	101,587,931
nssv1585737	Remapped	Perfect	NC_000010.10:g.(10 1547042_101548177) _(101577123_101587 931)del	GRCh37.p13	First Pass	NC_000010.10	Chr10	101,547,042	101,548,177	101,577,123	101,587,931
nssv1598677	Remapped	Perfect	NC_000010.10:g.(10 1547042_101548177) _(101577123_101587 931)del	GRCh37.p13	First Pass	NC_000010.10	Chr10	101,547,042	101,548,177	101,577,123	101,587,931
nssv1552667	Submitted genomic		NC_000010.9:g.(101 537032_101538167)_ (101567113_1015779 21)del	NCBI36 (hg18)		NC_000010.9	Chr10	101,537,032	101,538,167	101,567,113	101,577,921
nssv1556264	Submitted genomic		NC_000010.9:g.(101 537032_101538167)_ (101567113_1015779 21)del	NCBI36 (hg18)		NC_000010.9	Chr10	101,537,032	101,538,167	101,567,113	101,577,921
nssv1563897	Submitted genomic		NC_000010.9:g.(101 537032_101538167)_ (101567113_1015779 21)del	NCBI36 (hg18)		NC_000010.9	Chr10	101,537,032	101,538,167	101,567,113	101,577,921
nssv1581722	Submitted genomic		NC_000010.9:g.(101 537032_101538167)_ (101567113_1015779 21)del	NCBI36 (hg18)		NC_000010.9	Chr10	101,537,032	101,538,167	101,567,113	101,577,921
nssv1585737	Submitted genomic		NC_000010.9:g.(101 537032_101538167)_ (101567113_1015779 21)del	NCBI36 (hg18)		NC_000010.9	Chr10	101,537,032	101,538,167	101,567,113	101,577,921
nssv1598677	Submitted genomic		NC_000010.9:g.(101 537032_101538167)_ (101567113_1015779 21)del	NCBI36 (hg18)		NC_000010.9	Chr10	101,537,032	101,538,167	101,567,113	101,577,921

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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