nsv896324
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:16
- Validation:Not tested
- Clinical Assertions: No
- Region Size:176,535
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 2382 SVs from 107 studies. See in: genome view
Overlapping variant regions from other studies: 2382 SVs from 107 studies. See in: genome view
Overlapping variant regions from other studies: 995 SVs from 33 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv896324 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000010.11 | Chr10 | 133,412,162 | 133,432,340 | 133,572,278 | 133,588,696 |
| nsv896324 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000010.10 | Chr10 | 135,225,666 | 135,245,844 | 135,385,782 | 135,402,200 |
| nsv896324 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000010.9 | Chr10 | 135,075,656 | 135,095,834 | 135,235,772 | 135,252,190 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1521969 | copy number gain | SP52680 | SNP array | SNP genotyping analysis | 9 |
| nssv1531459 | copy number gain | MS10445 | SNP array | SNP genotyping analysis | 11 |
| nssv1536779 | copy number gain | MS12947 | SNP array | SNP genotyping analysis | 22 |
| nssv1536945 | copy number gain | MS13028 | SNP array | SNP genotyping analysis | 13 |
| nssv1539700 | copy number gain | MS14451 | SNP array | SNP genotyping analysis | 9 |
| nssv1540181 | copy number gain | MS14724 | SNP array | SNP genotyping analysis | 15 |
| nssv1541486 | copy number gain | MS15337 | SNP array | SNP genotyping analysis | 10 |
| nssv1541875 | copy number gain | MS15515 | SNP array | SNP genotyping analysis | 13 |
| nssv1545511 | copy number gain | MS16821 | SNP array | SNP genotyping analysis | 11 |
| nssv1547798 | copy number gain | MS17562 | SNP array | SNP genotyping analysis | 12 |
| nssv1551148 | copy number gain | MS18799 | SNP array | SNP genotyping analysis | 9 |
| nssv1555174 | copy number gain | MS21216 | SNP array | SNP genotyping analysis | 12 |
| nssv1558153 | copy number gain | MS23142 | SNP array | SNP genotyping analysis | 10 |
| nssv1562454 | copy number gain | MS25589 | SNP array | SNP genotyping analysis | 13 |
| nssv1567413 | copy number gain | IS31074 | SNP array | SNP genotyping analysis | 39 |
| nssv1570071 | copy number gain | IS31778 | SNP array | SNP genotyping analysis | 13 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1521969 | Remapped | Perfect | NC_000010.11:g.(13 3412162_133432340) _(133572278_133588 696)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 133,412,162 | 133,432,340 | 133,572,278 | 133,588,696 |
| nssv1531459 | Remapped | Perfect | NC_000010.11:g.(13 3412162_133432340) _(133572278_133588 696)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 133,412,162 | 133,432,340 | 133,572,278 | 133,588,696 |
| nssv1536779 | Remapped | Perfect | NC_000010.11:g.(13 3412162_133432340) _(133572278_133588 696)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 133,412,162 | 133,432,340 | 133,572,278 | 133,588,696 |
| nssv1536945 | Remapped | Perfect | NC_000010.11:g.(13 3412162_133432340) _(133572278_133588 696)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 133,412,162 | 133,432,340 | 133,572,278 | 133,588,696 |
| nssv1539700 | Remapped | Perfect | NC_000010.11:g.(13 3412162_133432340) _(133572278_133588 696)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 133,412,162 | 133,432,340 | 133,572,278 | 133,588,696 |
| nssv1540181 | Remapped | Perfect | NC_000010.11:g.(13 3412162_133432340) _(133572278_133588 696)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 133,412,162 | 133,432,340 | 133,572,278 | 133,588,696 |
| nssv1541486 | Remapped | Perfect | NC_000010.11:g.(13 3412162_133432340) _(133572278_133588 696)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 133,412,162 | 133,432,340 | 133,572,278 | 133,588,696 |
| nssv1541875 | Remapped | Perfect | NC_000010.11:g.(13 3412162_133432340) _(133572278_133588 696)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 133,412,162 | 133,432,340 | 133,572,278 | 133,588,696 |
| nssv1545511 | Remapped | Perfect | NC_000010.11:g.(13 3412162_133432340) _(133572278_133588 696)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 133,412,162 | 133,432,340 | 133,572,278 | 133,588,696 |
| nssv1547798 | Remapped | Perfect | NC_000010.11:g.(13 3412162_133432340) _(133572278_133588 696)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 133,412,162 | 133,432,340 | 133,572,278 | 133,588,696 |
| nssv1551148 | Remapped | Perfect | NC_000010.11:g.(13 3412162_133432340) _(133572278_133588 696)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 133,412,162 | 133,432,340 | 133,572,278 | 133,588,696 |
| nssv1555174 | Remapped | Perfect | NC_000010.11:g.(13 3412162_133432340) _(133572278_133588 696)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 133,412,162 | 133,432,340 | 133,572,278 | 133,588,696 |
| nssv1558153 | Remapped | Perfect | NC_000010.11:g.(13 3412162_133432340) _(133572278_133588 696)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 133,412,162 | 133,432,340 | 133,572,278 | 133,588,696 |
| nssv1562454 | Remapped | Perfect | NC_000010.11:g.(13 3412162_133432340) _(133572278_133588 696)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 133,412,162 | 133,432,340 | 133,572,278 | 133,588,696 |
| nssv1567413 | Remapped | Perfect | NC_000010.11:g.(13 3412162_133432340) _(133572278_133588 696)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 133,412,162 | 133,432,340 | 133,572,278 | 133,588,696 |
| nssv1570071 | Remapped | Perfect | NC_000010.11:g.(13 3412162_133432340) _(133572278_133588 696)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 133,412,162 | 133,432,340 | 133,572,278 | 133,588,696 |
| nssv1521969 | Remapped | Perfect | NC_000010.10:g.(13 5225666_135245844) _(135385782_135402 200)dup | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 135,225,666 | 135,245,844 | 135,385,782 | 135,402,200 |
| nssv1531459 | Remapped | Perfect | NC_000010.10:g.(13 5225666_135245844) _(135385782_135402 200)dup | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 135,225,666 | 135,245,844 | 135,385,782 | 135,402,200 |
| nssv1536779 | Remapped | Perfect | NC_000010.10:g.(13 5225666_135245844) _(135385782_135402 200)dup | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 135,225,666 | 135,245,844 | 135,385,782 | 135,402,200 |
| nssv1536945 | Remapped | Perfect | NC_000010.10:g.(13 5225666_135245844) _(135385782_135402 200)dup | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 135,225,666 | 135,245,844 | 135,385,782 | 135,402,200 |
| nssv1539700 | Remapped | Perfect | NC_000010.10:g.(13 5225666_135245844) _(135385782_135402 200)dup | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 135,225,666 | 135,245,844 | 135,385,782 | 135,402,200 |
| nssv1540181 | Remapped | Perfect | NC_000010.10:g.(13 5225666_135245844) _(135385782_135402 200)dup | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 135,225,666 | 135,245,844 | 135,385,782 | 135,402,200 |
| nssv1541486 | Remapped | Perfect | NC_000010.10:g.(13 5225666_135245844) _(135385782_135402 200)dup | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 135,225,666 | 135,245,844 | 135,385,782 | 135,402,200 |
| nssv1541875 | Remapped | Perfect | NC_000010.10:g.(13 5225666_135245844) _(135385782_135402 200)dup | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 135,225,666 | 135,245,844 | 135,385,782 | 135,402,200 |
| nssv1545511 | Remapped | Perfect | NC_000010.10:g.(13 5225666_135245844) _(135385782_135402 200)dup | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 135,225,666 | 135,245,844 | 135,385,782 | 135,402,200 |
| nssv1547798 | Remapped | Perfect | NC_000010.10:g.(13 5225666_135245844) _(135385782_135402 200)dup | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 135,225,666 | 135,245,844 | 135,385,782 | 135,402,200 |
| nssv1551148 | Remapped | Perfect | NC_000010.10:g.(13 5225666_135245844) _(135385782_135402 200)dup | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 135,225,666 | 135,245,844 | 135,385,782 | 135,402,200 |
| nssv1555174 | Remapped | Perfect | NC_000010.10:g.(13 5225666_135245844) _(135385782_135402 200)dup | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 135,225,666 | 135,245,844 | 135,385,782 | 135,402,200 |
| nssv1558153 | Remapped | Perfect | NC_000010.10:g.(13 5225666_135245844) _(135385782_135402 200)dup | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 135,225,666 | 135,245,844 | 135,385,782 | 135,402,200 |
| nssv1562454 | Remapped | Perfect | NC_000010.10:g.(13 5225666_135245844) _(135385782_135402 200)dup | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 135,225,666 | 135,245,844 | 135,385,782 | 135,402,200 |
| nssv1567413 | Remapped | Perfect | NC_000010.10:g.(13 5225666_135245844) _(135385782_135402 200)dup | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 135,225,666 | 135,245,844 | 135,385,782 | 135,402,200 |
| nssv1570071 | Remapped | Perfect | NC_000010.10:g.(13 5225666_135245844) _(135385782_135402 200)dup | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 135,225,666 | 135,245,844 | 135,385,782 | 135,402,200 |
| nssv1521969 | Submitted genomic | NC_000010.9:g.(135 075656_135095834)_ (135235772_1352521 90)dup | NCBI36 (hg18) | NC_000010.9 | Chr10 | 135,075,656 | 135,095,834 | 135,235,772 | 135,252,190 | ||
| nssv1531459 | Submitted genomic | NC_000010.9:g.(135 075656_135095834)_ (135235772_1352521 90)dup | NCBI36 (hg18) | NC_000010.9 | Chr10 | 135,075,656 | 135,095,834 | 135,235,772 | 135,252,190 | ||
| nssv1536779 | Submitted genomic | NC_000010.9:g.(135 075656_135095834)_ (135235772_1352521 90)dup | NCBI36 (hg18) | NC_000010.9 | Chr10 | 135,075,656 | 135,095,834 | 135,235,772 | 135,252,190 | ||
| nssv1536945 | Submitted genomic | NC_000010.9:g.(135 075656_135095834)_ (135235772_1352521 90)dup | NCBI36 (hg18) | NC_000010.9 | Chr10 | 135,075,656 | 135,095,834 | 135,235,772 | 135,252,190 | ||
| nssv1539700 | Submitted genomic | NC_000010.9:g.(135 075656_135095834)_ (135235772_1352521 90)dup | NCBI36 (hg18) | NC_000010.9 | Chr10 | 135,075,656 | 135,095,834 | 135,235,772 | 135,252,190 | ||
| nssv1540181 | Submitted genomic | NC_000010.9:g.(135 075656_135095834)_ (135235772_1352521 90)dup | NCBI36 (hg18) | NC_000010.9 | Chr10 | 135,075,656 | 135,095,834 | 135,235,772 | 135,252,190 | ||
| nssv1541486 | Submitted genomic | NC_000010.9:g.(135 075656_135095834)_ (135235772_1352521 90)dup | NCBI36 (hg18) | NC_000010.9 | Chr10 | 135,075,656 | 135,095,834 | 135,235,772 | 135,252,190 | ||
| nssv1541875 | Submitted genomic | NC_000010.9:g.(135 075656_135095834)_ (135235772_1352521 90)dup | NCBI36 (hg18) | NC_000010.9 | Chr10 | 135,075,656 | 135,095,834 | 135,235,772 | 135,252,190 | ||
| nssv1545511 | Submitted genomic | NC_000010.9:g.(135 075656_135095834)_ (135235772_1352521 90)dup | NCBI36 (hg18) | NC_000010.9 | Chr10 | 135,075,656 | 135,095,834 | 135,235,772 | 135,252,190 | ||
| nssv1547798 | Submitted genomic | NC_000010.9:g.(135 075656_135095834)_ (135235772_1352521 90)dup | NCBI36 (hg18) | NC_000010.9 | Chr10 | 135,075,656 | 135,095,834 | 135,235,772 | 135,252,190 | ||
| nssv1551148 | Submitted genomic | NC_000010.9:g.(135 075656_135095834)_ (135235772_1352521 90)dup | NCBI36 (hg18) | NC_000010.9 | Chr10 | 135,075,656 | 135,095,834 | 135,235,772 | 135,252,190 | ||
| nssv1555174 | Submitted genomic | NC_000010.9:g.(135 075656_135095834)_ (135235772_1352521 90)dup | NCBI36 (hg18) | NC_000010.9 | Chr10 | 135,075,656 | 135,095,834 | 135,235,772 | 135,252,190 | ||
| nssv1558153 | Submitted genomic | NC_000010.9:g.(135 075656_135095834)_ (135235772_1352521 90)dup | NCBI36 (hg18) | NC_000010.9 | Chr10 | 135,075,656 | 135,095,834 | 135,235,772 | 135,252,190 | ||
| nssv1562454 | Submitted genomic | NC_000010.9:g.(135 075656_135095834)_ (135235772_1352521 90)dup | NCBI36 (hg18) | NC_000010.9 | Chr10 | 135,075,656 | 135,095,834 | 135,235,772 | 135,252,190 | ||
| nssv1567413 | Submitted genomic | NC_000010.9:g.(135 075656_135095834)_ (135235772_1352521 90)dup | NCBI36 (hg18) | NC_000010.9 | Chr10 | 135,075,656 | 135,095,834 | 135,235,772 | 135,252,190 | ||
| nssv1570071 | Submitted genomic | NC_000010.9:g.(135 075656_135095834)_ (135235772_1352521 90)dup | NCBI36 (hg18) | NC_000010.9 | Chr10 | 135,075,656 | 135,095,834 | 135,235,772 | 135,252,190 |