nsv896886
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:92,409
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 422 SVs from 69 studies. See in: genome view
Overlapping variant regions from other studies: 422 SVs from 69 studies. See in: genome view
Overlapping variant regions from other studies: 186 SVs from 19 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv896886 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000011.10 | Chr11 | 3,244,721 | 3,262,852 | 3,335,056 | 3,337,129 |
| nsv896886 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000011.9 | Chr11 | 3,265,951 | 3,284,082 | 3,356,286 | 3,358,359 |
| nsv896886 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000011.8 | Chr11 | 3,222,527 | 3,240,658 | 3,312,862 | 3,314,935 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1589961 | copy number gain | IS38436 | SNP array | SNP genotyping analysis | 18 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1589961 | Remapped | Perfect | NC_000011.10:g.(32 44721_3262852)_(33 35056_3337129)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 3,244,721 | 3,262,852 | 3,335,056 | 3,337,129 |
| nssv1589961 | Remapped | Perfect | NC_000011.9:g.(326 5951_3284082)_(335 6286_3358359)dup | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 3,265,951 | 3,284,082 | 3,356,286 | 3,358,359 |
| nssv1589961 | Submitted genomic | NC_000011.8:g.(322 2527_3240658)_(331 2862_3314935)dup | NCBI36 (hg18) | NC_000011.8 | Chr11 | 3,222,527 | 3,240,658 | 3,312,862 | 3,314,935 |