nsv896957
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:17
- Validation:Not tested
- Clinical Assertions: No
- Region Size:43,985
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 538 SVs from 94 studies. See in: genome view
Overlapping variant regions from other studies: 538 SVs from 94 studies. See in: genome view
Overlapping variant regions from other studies: 186 SVs from 27 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv896957 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000011.10 | Chr11 | 5,856,679 | 5,872,146 | 5,894,579 | 5,900,663 |
| nsv896957 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000011.9 | Chr11 | 5,877,909 | 5,893,376 | 5,915,809 | 5,921,893 |
| nsv896957 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000011.8 | Chr11 | 5,834,485 | 5,849,952 | 5,872,385 | 5,878,469 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1499320 | copy number gain | SP50593 | SNP array | SNP genotyping analysis | 25 |
| nssv1499423 | copy number gain | SP50179 | SNP array | SNP genotyping analysis | 29 |
| nssv1502960 | copy number gain | SP51460 | SNP array | SNP genotyping analysis | 18 |
| nssv1503264 | copy number gain | SP52019 | SNP array | SNP genotyping analysis | 22 |
| nssv1504108 | copy number gain | SP52195 | SNP array | SNP genotyping analysis | 13 |
| nssv1504259 | copy number gain | SP52377 | SNP array | SNP genotyping analysis | 13 |
| nssv1506442 | copy number gain | SP54350 | SNP array | SNP genotyping analysis | 16 |
| nssv1511874 | copy number gain | SP55131 | SNP array | SNP genotyping analysis | 26 |
| nssv1512398 | copy number gain | SP55469 | SNP array | SNP genotyping analysis | 18 |
| nssv1512538 | copy number gain | SP55551 | SNP array | SNP genotyping analysis | 13 |
| nssv1513142 | copy number gain | SP55690 | SNP array | SNP genotyping analysis | 15 |
| nssv1513523 | copy number gain | SP55791 | SNP array | SNP genotyping analysis | 26 |
| nssv1517392 | copy number gain | SP57269 | SNP array | SNP genotyping analysis | 14 |
| nssv1518396 | copy number gain | SP57545 | SNP array | SNP genotyping analysis | 18 |
| nssv1519096 | copy number gain | SP80953 | SNP array | SNP genotyping analysis | 16 |
| nssv1519225 | copy number gain | SP80986 | SNP array | SNP genotyping analysis | 20 |
| nssv1519286 | copy number gain | SP81003 | SNP array | SNP genotyping analysis | 17 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1499320 | Remapped | Perfect | NC_000011.10:g.(58 56679_5872146)_(58 94579_5900663)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 5,856,679 | 5,872,146 | 5,894,579 | 5,900,663 |
| nssv1499423 | Remapped | Perfect | NC_000011.10:g.(58 56679_5872146)_(58 94579_5900663)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 5,856,679 | 5,872,146 | 5,894,579 | 5,900,663 |
| nssv1502960 | Remapped | Perfect | NC_000011.10:g.(58 56679_5872146)_(58 94579_5900663)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 5,856,679 | 5,872,146 | 5,894,579 | 5,900,663 |
| nssv1503264 | Remapped | Perfect | NC_000011.10:g.(58 56679_5872146)_(58 94579_5900663)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 5,856,679 | 5,872,146 | 5,894,579 | 5,900,663 |
| nssv1504108 | Remapped | Perfect | NC_000011.10:g.(58 56679_5872146)_(58 94579_5900663)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 5,856,679 | 5,872,146 | 5,894,579 | 5,900,663 |
| nssv1504259 | Remapped | Perfect | NC_000011.10:g.(58 56679_5872146)_(58 94579_5900663)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 5,856,679 | 5,872,146 | 5,894,579 | 5,900,663 |
| nssv1506442 | Remapped | Perfect | NC_000011.10:g.(58 56679_5872146)_(58 94579_5900663)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 5,856,679 | 5,872,146 | 5,894,579 | 5,900,663 |
| nssv1511874 | Remapped | Perfect | NC_000011.10:g.(58 56679_5872146)_(58 94579_5900663)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 5,856,679 | 5,872,146 | 5,894,579 | 5,900,663 |
| nssv1512398 | Remapped | Perfect | NC_000011.10:g.(58 56679_5872146)_(58 94579_5900663)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 5,856,679 | 5,872,146 | 5,894,579 | 5,900,663 |
| nssv1512538 | Remapped | Perfect | NC_000011.10:g.(58 56679_5872146)_(58 94579_5900663)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 5,856,679 | 5,872,146 | 5,894,579 | 5,900,663 |
| nssv1513142 | Remapped | Perfect | NC_000011.10:g.(58 56679_5872146)_(58 94579_5900663)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 5,856,679 | 5,872,146 | 5,894,579 | 5,900,663 |
| nssv1513523 | Remapped | Perfect | NC_000011.10:g.(58 56679_5872146)_(58 94579_5900663)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 5,856,679 | 5,872,146 | 5,894,579 | 5,900,663 |
| nssv1517392 | Remapped | Perfect | NC_000011.10:g.(58 56679_5872146)_(58 94579_5900663)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 5,856,679 | 5,872,146 | 5,894,579 | 5,900,663 |
| nssv1518396 | Remapped | Perfect | NC_000011.10:g.(58 56679_5872146)_(58 94579_5900663)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 5,856,679 | 5,872,146 | 5,894,579 | 5,900,663 |
| nssv1519096 | Remapped | Perfect | NC_000011.10:g.(58 56679_5872146)_(58 94579_5900663)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 5,856,679 | 5,872,146 | 5,894,579 | 5,900,663 |
| nssv1519225 | Remapped | Perfect | NC_000011.10:g.(58 56679_5872146)_(58 94579_5900663)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 5,856,679 | 5,872,146 | 5,894,579 | 5,900,663 |
| nssv1519286 | Remapped | Perfect | NC_000011.10:g.(58 56679_5872146)_(58 94579_5900663)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 5,856,679 | 5,872,146 | 5,894,579 | 5,900,663 |
| nssv1499320 | Remapped | Perfect | NC_000011.9:g.(587 7909_5893376)_(591 5809_5921893)dup | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 5,877,909 | 5,893,376 | 5,915,809 | 5,921,893 |
| nssv1499423 | Remapped | Perfect | NC_000011.9:g.(587 7909_5893376)_(591 5809_5921893)dup | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 5,877,909 | 5,893,376 | 5,915,809 | 5,921,893 |
| nssv1502960 | Remapped | Perfect | NC_000011.9:g.(587 7909_5893376)_(591 5809_5921893)dup | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 5,877,909 | 5,893,376 | 5,915,809 | 5,921,893 |
| nssv1503264 | Remapped | Perfect | NC_000011.9:g.(587 7909_5893376)_(591 5809_5921893)dup | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 5,877,909 | 5,893,376 | 5,915,809 | 5,921,893 |
| nssv1504108 | Remapped | Perfect | NC_000011.9:g.(587 7909_5893376)_(591 5809_5921893)dup | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 5,877,909 | 5,893,376 | 5,915,809 | 5,921,893 |
| nssv1504259 | Remapped | Perfect | NC_000011.9:g.(587 7909_5893376)_(591 5809_5921893)dup | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 5,877,909 | 5,893,376 | 5,915,809 | 5,921,893 |
| nssv1506442 | Remapped | Perfect | NC_000011.9:g.(587 7909_5893376)_(591 5809_5921893)dup | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 5,877,909 | 5,893,376 | 5,915,809 | 5,921,893 |
| nssv1511874 | Remapped | Perfect | NC_000011.9:g.(587 7909_5893376)_(591 5809_5921893)dup | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 5,877,909 | 5,893,376 | 5,915,809 | 5,921,893 |
| nssv1512398 | Remapped | Perfect | NC_000011.9:g.(587 7909_5893376)_(591 5809_5921893)dup | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 5,877,909 | 5,893,376 | 5,915,809 | 5,921,893 |
| nssv1512538 | Remapped | Perfect | NC_000011.9:g.(587 7909_5893376)_(591 5809_5921893)dup | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 5,877,909 | 5,893,376 | 5,915,809 | 5,921,893 |
| nssv1513142 | Remapped | Perfect | NC_000011.9:g.(587 7909_5893376)_(591 5809_5921893)dup | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 5,877,909 | 5,893,376 | 5,915,809 | 5,921,893 |
| nssv1513523 | Remapped | Perfect | NC_000011.9:g.(587 7909_5893376)_(591 5809_5921893)dup | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 5,877,909 | 5,893,376 | 5,915,809 | 5,921,893 |
| nssv1517392 | Remapped | Perfect | NC_000011.9:g.(587 7909_5893376)_(591 5809_5921893)dup | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 5,877,909 | 5,893,376 | 5,915,809 | 5,921,893 |
| nssv1518396 | Remapped | Perfect | NC_000011.9:g.(587 7909_5893376)_(591 5809_5921893)dup | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 5,877,909 | 5,893,376 | 5,915,809 | 5,921,893 |
| nssv1519096 | Remapped | Perfect | NC_000011.9:g.(587 7909_5893376)_(591 5809_5921893)dup | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 5,877,909 | 5,893,376 | 5,915,809 | 5,921,893 |
| nssv1519225 | Remapped | Perfect | NC_000011.9:g.(587 7909_5893376)_(591 5809_5921893)dup | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 5,877,909 | 5,893,376 | 5,915,809 | 5,921,893 |
| nssv1519286 | Remapped | Perfect | NC_000011.9:g.(587 7909_5893376)_(591 5809_5921893)dup | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 5,877,909 | 5,893,376 | 5,915,809 | 5,921,893 |
| nssv1499320 | Submitted genomic | NC_000011.8:g.(583 4485_5849952)_(587 2385_5878469)dup | NCBI36 (hg18) | NC_000011.8 | Chr11 | 5,834,485 | 5,849,952 | 5,872,385 | 5,878,469 | ||
| nssv1499423 | Submitted genomic | NC_000011.8:g.(583 4485_5849952)_(587 2385_5878469)dup | NCBI36 (hg18) | NC_000011.8 | Chr11 | 5,834,485 | 5,849,952 | 5,872,385 | 5,878,469 | ||
| nssv1502960 | Submitted genomic | NC_000011.8:g.(583 4485_5849952)_(587 2385_5878469)dup | NCBI36 (hg18) | NC_000011.8 | Chr11 | 5,834,485 | 5,849,952 | 5,872,385 | 5,878,469 | ||
| nssv1503264 | Submitted genomic | NC_000011.8:g.(583 4485_5849952)_(587 2385_5878469)dup | NCBI36 (hg18) | NC_000011.8 | Chr11 | 5,834,485 | 5,849,952 | 5,872,385 | 5,878,469 | ||
| nssv1504108 | Submitted genomic | NC_000011.8:g.(583 4485_5849952)_(587 2385_5878469)dup | NCBI36 (hg18) | NC_000011.8 | Chr11 | 5,834,485 | 5,849,952 | 5,872,385 | 5,878,469 | ||
| nssv1504259 | Submitted genomic | NC_000011.8:g.(583 4485_5849952)_(587 2385_5878469)dup | NCBI36 (hg18) | NC_000011.8 | Chr11 | 5,834,485 | 5,849,952 | 5,872,385 | 5,878,469 | ||
| nssv1506442 | Submitted genomic | NC_000011.8:g.(583 4485_5849952)_(587 2385_5878469)dup | NCBI36 (hg18) | NC_000011.8 | Chr11 | 5,834,485 | 5,849,952 | 5,872,385 | 5,878,469 | ||
| nssv1511874 | Submitted genomic | NC_000011.8:g.(583 4485_5849952)_(587 2385_5878469)dup | NCBI36 (hg18) | NC_000011.8 | Chr11 | 5,834,485 | 5,849,952 | 5,872,385 | 5,878,469 | ||
| nssv1512398 | Submitted genomic | NC_000011.8:g.(583 4485_5849952)_(587 2385_5878469)dup | NCBI36 (hg18) | NC_000011.8 | Chr11 | 5,834,485 | 5,849,952 | 5,872,385 | 5,878,469 | ||
| nssv1512538 | Submitted genomic | NC_000011.8:g.(583 4485_5849952)_(587 2385_5878469)dup | NCBI36 (hg18) | NC_000011.8 | Chr11 | 5,834,485 | 5,849,952 | 5,872,385 | 5,878,469 | ||
| nssv1513142 | Submitted genomic | NC_000011.8:g.(583 4485_5849952)_(587 2385_5878469)dup | NCBI36 (hg18) | NC_000011.8 | Chr11 | 5,834,485 | 5,849,952 | 5,872,385 | 5,878,469 | ||
| nssv1513523 | Submitted genomic | NC_000011.8:g.(583 4485_5849952)_(587 2385_5878469)dup | NCBI36 (hg18) | NC_000011.8 | Chr11 | 5,834,485 | 5,849,952 | 5,872,385 | 5,878,469 | ||
| nssv1517392 | Submitted genomic | NC_000011.8:g.(583 4485_5849952)_(587 2385_5878469)dup | NCBI36 (hg18) | NC_000011.8 | Chr11 | 5,834,485 | 5,849,952 | 5,872,385 | 5,878,469 | ||
| nssv1518396 | Submitted genomic | NC_000011.8:g.(583 4485_5849952)_(587 2385_5878469)dup | NCBI36 (hg18) | NC_000011.8 | Chr11 | 5,834,485 | 5,849,952 | 5,872,385 | 5,878,469 | ||
| nssv1519096 | Submitted genomic | NC_000011.8:g.(583 4485_5849952)_(587 2385_5878469)dup | NCBI36 (hg18) | NC_000011.8 | Chr11 | 5,834,485 | 5,849,952 | 5,872,385 | 5,878,469 | ||
| nssv1519225 | Submitted genomic | NC_000011.8:g.(583 4485_5849952)_(587 2385_5878469)dup | NCBI36 (hg18) | NC_000011.8 | Chr11 | 5,834,485 | 5,849,952 | 5,872,385 | 5,878,469 | ||
| nssv1519286 | Submitted genomic | NC_000011.8:g.(583 4485_5849952)_(587 2385_5878469)dup | NCBI36 (hg18) | NC_000011.8 | Chr11 | 5,834,485 | 5,849,952 | 5,872,385 | 5,878,469 |