nsv897250
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:18
- Validation:Not tested
- Clinical Assertions: No
- Region Size:91,079
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 499 SVs from 69 studies. See in: genome view
Overlapping variant regions from other studies: 499 SVs from 69 studies. See in: genome view
Overlapping variant regions from other studies: 191 SVs from 26 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv897250 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000011.10 | Chr11 | 38,227,656 | 38,230,635 | 38,304,833 | 38,318,734 |
| nsv897250 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000011.9 | Chr11 | 38,249,206 | 38,252,185 | 38,326,383 | 38,340,284 |
| nsv897250 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000011.8 | Chr11 | 38,205,782 | 38,208,761 | 38,282,959 | 38,296,860 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1532048 | copy number loss | MS10699 | SNP array | SNP genotyping analysis | 39 |
| nssv1532157 | copy number loss | MS10727 | SNP array | SNP genotyping analysis | 29 |
| nssv1532680 | copy number loss | MS10802 | SNP array | SNP genotyping analysis | 73 |
| nssv1535583 | copy number loss | MS12266 | SNP array | SNP genotyping analysis | 58 |
| nssv1551347 | copy number loss | MS18847 | SNP array | SNP genotyping analysis | 113 |
| nssv1552859 | copy number loss | MS19634 | SNP array | SNP genotyping analysis | 77 |
| nssv1554634 | copy number loss | MS20872 | SNP array | SNP genotyping analysis | 79 |
| nssv1556349 | copy number loss | MS21928 | SNP array | SNP genotyping analysis | 9 |
| nssv1556630 | copy number loss | MS22104 | SNP array | SNP genotyping analysis | 139 |
| nssv1558996 | copy number loss | MS23670 | SNP array | SNP genotyping analysis | 55 |
| nssv1563971 | copy number gain | IS30139 | SNP array | SNP genotyping analysis | 7 |
| nssv1570135 | copy number loss | IS31812 | SNP array | SNP genotyping analysis | 21 |
| nssv1577773 | copy number gain | IS34555 | SNP array | SNP genotyping analysis | 23 |
| nssv1581850 | copy number loss | IS35742 | SNP array | SNP genotyping analysis | 62 |
| nssv1583065 | copy number loss | IS36244 | SNP array | SNP genotyping analysis | 54 |
| nssv1588661 | copy number loss | IS38231 | SNP array | SNP genotyping analysis | 19 |
| nssv1594894 | copy number gain | IS40057 | SNP array | SNP genotyping analysis | 8 |
| nssv1597676 | copy number loss | IS41224 | SNP array | SNP genotyping analysis | 51 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1532048 | Remapped | Perfect | NC_000011.10:g.(38 227656_38230635)_( 38304833_38318734) del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 38,227,656 | 38,230,635 | 38,304,833 | 38,318,734 |
| nssv1532157 | Remapped | Perfect | NC_000011.10:g.(38 227656_38230635)_( 38304833_38318734) del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 38,227,656 | 38,230,635 | 38,304,833 | 38,318,734 |
| nssv1532680 | Remapped | Perfect | NC_000011.10:g.(38 227656_38230635)_( 38304833_38318734) del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 38,227,656 | 38,230,635 | 38,304,833 | 38,318,734 |
| nssv1535583 | Remapped | Perfect | NC_000011.10:g.(38 227656_38230635)_( 38304833_38318734) del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 38,227,656 | 38,230,635 | 38,304,833 | 38,318,734 |
| nssv1551347 | Remapped | Perfect | NC_000011.10:g.(38 227656_38230635)_( 38304833_38318734) del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 38,227,656 | 38,230,635 | 38,304,833 | 38,318,734 |
| nssv1552859 | Remapped | Perfect | NC_000011.10:g.(38 227656_38230635)_( 38304833_38318734) del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 38,227,656 | 38,230,635 | 38,304,833 | 38,318,734 |
| nssv1554634 | Remapped | Perfect | NC_000011.10:g.(38 227656_38230635)_( 38304833_38318734) del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 38,227,656 | 38,230,635 | 38,304,833 | 38,318,734 |
| nssv1556349 | Remapped | Perfect | NC_000011.10:g.(38 227656_38230635)_( 38304833_38318734) del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 38,227,656 | 38,230,635 | 38,304,833 | 38,318,734 |
| nssv1556630 | Remapped | Perfect | NC_000011.10:g.(38 227656_38230635)_( 38304833_38318734) del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 38,227,656 | 38,230,635 | 38,304,833 | 38,318,734 |
| nssv1558996 | Remapped | Perfect | NC_000011.10:g.(38 227656_38230635)_( 38304833_38318734) del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 38,227,656 | 38,230,635 | 38,304,833 | 38,318,734 |
| nssv1563971 | Remapped | Perfect | NC_000011.10:g.(38 227656_38230635)_( 38304833_38318734) dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 38,227,656 | 38,230,635 | 38,304,833 | 38,318,734 |
| nssv1570135 | Remapped | Perfect | NC_000011.10:g.(38 227656_38230635)_( 38304833_38318734) del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 38,227,656 | 38,230,635 | 38,304,833 | 38,318,734 |
| nssv1577773 | Remapped | Perfect | NC_000011.10:g.(38 227656_38230635)_( 38304833_38318734) dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 38,227,656 | 38,230,635 | 38,304,833 | 38,318,734 |
| nssv1581850 | Remapped | Perfect | NC_000011.10:g.(38 227656_38230635)_( 38304833_38318734) del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 38,227,656 | 38,230,635 | 38,304,833 | 38,318,734 |
| nssv1583065 | Remapped | Perfect | NC_000011.10:g.(38 227656_38230635)_( 38304833_38318734) del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 38,227,656 | 38,230,635 | 38,304,833 | 38,318,734 |
| nssv1588661 | Remapped | Perfect | NC_000011.10:g.(38 227656_38230635)_( 38304833_38318734) del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 38,227,656 | 38,230,635 | 38,304,833 | 38,318,734 |
| nssv1594894 | Remapped | Perfect | NC_000011.10:g.(38 227656_38230635)_( 38304833_38318734) dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 38,227,656 | 38,230,635 | 38,304,833 | 38,318,734 |
| nssv1597676 | Remapped | Perfect | NC_000011.10:g.(38 227656_38230635)_( 38304833_38318734) del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 38,227,656 | 38,230,635 | 38,304,833 | 38,318,734 |
| nssv1532048 | Remapped | Perfect | NC_000011.9:g.(382 49206_38252185)_(3 8326383_38340284)d el | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 38,249,206 | 38,252,185 | 38,326,383 | 38,340,284 |
| nssv1532157 | Remapped | Perfect | NC_000011.9:g.(382 49206_38252185)_(3 8326383_38340284)d el | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 38,249,206 | 38,252,185 | 38,326,383 | 38,340,284 |
| nssv1532680 | Remapped | Perfect | NC_000011.9:g.(382 49206_38252185)_(3 8326383_38340284)d el | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 38,249,206 | 38,252,185 | 38,326,383 | 38,340,284 |
| nssv1535583 | Remapped | Perfect | NC_000011.9:g.(382 49206_38252185)_(3 8326383_38340284)d el | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 38,249,206 | 38,252,185 | 38,326,383 | 38,340,284 |
| nssv1551347 | Remapped | Perfect | NC_000011.9:g.(382 49206_38252185)_(3 8326383_38340284)d el | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 38,249,206 | 38,252,185 | 38,326,383 | 38,340,284 |
| nssv1552859 | Remapped | Perfect | NC_000011.9:g.(382 49206_38252185)_(3 8326383_38340284)d el | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 38,249,206 | 38,252,185 | 38,326,383 | 38,340,284 |
| nssv1554634 | Remapped | Perfect | NC_000011.9:g.(382 49206_38252185)_(3 8326383_38340284)d el | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 38,249,206 | 38,252,185 | 38,326,383 | 38,340,284 |
| nssv1556349 | Remapped | Perfect | NC_000011.9:g.(382 49206_38252185)_(3 8326383_38340284)d el | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 38,249,206 | 38,252,185 | 38,326,383 | 38,340,284 |
| nssv1556630 | Remapped | Perfect | NC_000011.9:g.(382 49206_38252185)_(3 8326383_38340284)d el | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 38,249,206 | 38,252,185 | 38,326,383 | 38,340,284 |
| nssv1558996 | Remapped | Perfect | NC_000011.9:g.(382 49206_38252185)_(3 8326383_38340284)d el | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 38,249,206 | 38,252,185 | 38,326,383 | 38,340,284 |
| nssv1563971 | Remapped | Perfect | NC_000011.9:g.(382 49206_38252185)_(3 8326383_38340284)d up | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 38,249,206 | 38,252,185 | 38,326,383 | 38,340,284 |
| nssv1570135 | Remapped | Perfect | NC_000011.9:g.(382 49206_38252185)_(3 8326383_38340284)d el | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 38,249,206 | 38,252,185 | 38,326,383 | 38,340,284 |
| nssv1577773 | Remapped | Perfect | NC_000011.9:g.(382 49206_38252185)_(3 8326383_38340284)d up | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 38,249,206 | 38,252,185 | 38,326,383 | 38,340,284 |
| nssv1581850 | Remapped | Perfect | NC_000011.9:g.(382 49206_38252185)_(3 8326383_38340284)d el | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 38,249,206 | 38,252,185 | 38,326,383 | 38,340,284 |
| nssv1583065 | Remapped | Perfect | NC_000011.9:g.(382 49206_38252185)_(3 8326383_38340284)d el | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 38,249,206 | 38,252,185 | 38,326,383 | 38,340,284 |
| nssv1588661 | Remapped | Perfect | NC_000011.9:g.(382 49206_38252185)_(3 8326383_38340284)d el | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 38,249,206 | 38,252,185 | 38,326,383 | 38,340,284 |
| nssv1594894 | Remapped | Perfect | NC_000011.9:g.(382 49206_38252185)_(3 8326383_38340284)d up | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 38,249,206 | 38,252,185 | 38,326,383 | 38,340,284 |
| nssv1597676 | Remapped | Perfect | NC_000011.9:g.(382 49206_38252185)_(3 8326383_38340284)d el | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 38,249,206 | 38,252,185 | 38,326,383 | 38,340,284 |
| nssv1532048 | Submitted genomic | NC_000011.8:g.(382 05782_38208761)_(3 8282959_38296860)d el | NCBI36 (hg18) | NC_000011.8 | Chr11 | 38,205,782 | 38,208,761 | 38,282,959 | 38,296,860 | ||
| nssv1532157 | Submitted genomic | NC_000011.8:g.(382 05782_38208761)_(3 8282959_38296860)d el | NCBI36 (hg18) | NC_000011.8 | Chr11 | 38,205,782 | 38,208,761 | 38,282,959 | 38,296,860 | ||
| nssv1532680 | Submitted genomic | NC_000011.8:g.(382 05782_38208761)_(3 8282959_38296860)d el | NCBI36 (hg18) | NC_000011.8 | Chr11 | 38,205,782 | 38,208,761 | 38,282,959 | 38,296,860 | ||
| nssv1535583 | Submitted genomic | NC_000011.8:g.(382 05782_38208761)_(3 8282959_38296860)d el | NCBI36 (hg18) | NC_000011.8 | Chr11 | 38,205,782 | 38,208,761 | 38,282,959 | 38,296,860 | ||
| nssv1551347 | Submitted genomic | NC_000011.8:g.(382 05782_38208761)_(3 8282959_38296860)d el | NCBI36 (hg18) | NC_000011.8 | Chr11 | 38,205,782 | 38,208,761 | 38,282,959 | 38,296,860 | ||
| nssv1552859 | Submitted genomic | NC_000011.8:g.(382 05782_38208761)_(3 8282959_38296860)d el | NCBI36 (hg18) | NC_000011.8 | Chr11 | 38,205,782 | 38,208,761 | 38,282,959 | 38,296,860 | ||
| nssv1554634 | Submitted genomic | NC_000011.8:g.(382 05782_38208761)_(3 8282959_38296860)d el | NCBI36 (hg18) | NC_000011.8 | Chr11 | 38,205,782 | 38,208,761 | 38,282,959 | 38,296,860 | ||
| nssv1556349 | Submitted genomic | NC_000011.8:g.(382 05782_38208761)_(3 8282959_38296860)d el | NCBI36 (hg18) | NC_000011.8 | Chr11 | 38,205,782 | 38,208,761 | 38,282,959 | 38,296,860 | ||
| nssv1556630 | Submitted genomic | NC_000011.8:g.(382 05782_38208761)_(3 8282959_38296860)d el | NCBI36 (hg18) | NC_000011.8 | Chr11 | 38,205,782 | 38,208,761 | 38,282,959 | 38,296,860 | ||
| nssv1558996 | Submitted genomic | NC_000011.8:g.(382 05782_38208761)_(3 8282959_38296860)d el | NCBI36 (hg18) | NC_000011.8 | Chr11 | 38,205,782 | 38,208,761 | 38,282,959 | 38,296,860 | ||
| nssv1563971 | Submitted genomic | NC_000011.8:g.(382 05782_38208761)_(3 8282959_38296860)d up | NCBI36 (hg18) | NC_000011.8 | Chr11 | 38,205,782 | 38,208,761 | 38,282,959 | 38,296,860 | ||
| nssv1570135 | Submitted genomic | NC_000011.8:g.(382 05782_38208761)_(3 8282959_38296860)d el | NCBI36 (hg18) | NC_000011.8 | Chr11 | 38,205,782 | 38,208,761 | 38,282,959 | 38,296,860 | ||
| nssv1577773 | Submitted genomic | NC_000011.8:g.(382 05782_38208761)_(3 8282959_38296860)d up | NCBI36 (hg18) | NC_000011.8 | Chr11 | 38,205,782 | 38,208,761 | 38,282,959 | 38,296,860 | ||
| nssv1581850 | Submitted genomic | NC_000011.8:g.(382 05782_38208761)_(3 8282959_38296860)d el | NCBI36 (hg18) | NC_000011.8 | Chr11 | 38,205,782 | 38,208,761 | 38,282,959 | 38,296,860 | ||
| nssv1583065 | Submitted genomic | NC_000011.8:g.(382 05782_38208761)_(3 8282959_38296860)d el | NCBI36 (hg18) | NC_000011.8 | Chr11 | 38,205,782 | 38,208,761 | 38,282,959 | 38,296,860 | ||
| nssv1588661 | Submitted genomic | NC_000011.8:g.(382 05782_38208761)_(3 8282959_38296860)d el | NCBI36 (hg18) | NC_000011.8 | Chr11 | 38,205,782 | 38,208,761 | 38,282,959 | 38,296,860 | ||
| nssv1594894 | Submitted genomic | NC_000011.8:g.(382 05782_38208761)_(3 8282959_38296860)d up | NCBI36 (hg18) | NC_000011.8 | Chr11 | 38,205,782 | 38,208,761 | 38,282,959 | 38,296,860 | ||
| nssv1597676 | Submitted genomic | NC_000011.8:g.(382 05782_38208761)_(3 8282959_38296860)d el | NCBI36 (hg18) | NC_000011.8 | Chr11 | 38,205,782 | 38,208,761 | 38,282,959 | 38,296,860 |