nsv897251
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:95,827
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 509 SVs from 69 studies. See in: genome view
Overlapping variant regions from other studies: 509 SVs from 69 studies. See in: genome view
Overlapping variant regions from other studies: 194 SVs from 26 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv897251 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000011.10 | Chr11 | 38,227,656 | 38,230,635 | 38,318,734 | 38,323,482 |
| nsv897251 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000011.9 | Chr11 | 38,249,206 | 38,252,185 | 38,340,284 | 38,345,032 |
| nsv897251 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000011.8 | Chr11 | 38,205,782 | 38,208,761 | 38,296,860 | 38,301,608 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1536543 | copy number loss | MS12827 | SNP array | SNP genotyping analysis | 60 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1536543 | Remapped | Perfect | NC_000011.10:g.(38 227656_38230635)_( 38318734_38323482) del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 38,227,656 | 38,230,635 | 38,318,734 | 38,323,482 |
| nssv1536543 | Remapped | Perfect | NC_000011.9:g.(382 49206_38252185)_(3 8340284_38345032)d el | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 38,249,206 | 38,252,185 | 38,340,284 | 38,345,032 |
| nssv1536543 | Submitted genomic | NC_000011.8:g.(382 05782_38208761)_(3 8296860_38301608)d el | NCBI36 (hg18) | NC_000011.8 | Chr11 | 38,205,782 | 38,208,761 | 38,296,860 | 38,301,608 |