nsv897255
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:7
- Validation:Not tested
- Clinical Assertions: No
- Region Size:76,279
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 441 SVs from 62 studies. See in: genome view
Overlapping variant regions from other studies: 441 SVs from 62 studies. See in: genome view
Overlapping variant regions from other studies: 179 SVs from 25 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv897255 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000011.10 | Chr11 | 38,242,456 | 38,243,164 | 38,304,833 | 38,318,734 |
| nsv897255 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000011.9 | Chr11 | 38,264,006 | 38,264,714 | 38,326,383 | 38,340,284 |
| nsv897255 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000011.8 | Chr11 | 38,220,582 | 38,221,290 | 38,282,959 | 38,296,860 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1546191 | copy number loss | MS17114 | SNP array | SNP genotyping analysis | 219 |
| nssv1567030 | copy number loss | IS31041 | SNP array | SNP genotyping analysis | 83 |
| nssv1568962 | copy number loss | IS31373 | SNP array | SNP genotyping analysis | 81 |
| nssv1574072 | copy number loss | IS33507 | SNP array | SNP genotyping analysis | 41 |
| nssv1575872 | copy number loss | IS33832 | SNP array | SNP genotyping analysis | 20 |
| nssv1578276 | copy number gain | IS34748 | SNP array | SNP genotyping analysis | 22 |
| nssv1584244 | copy number gain | IS36911 | SNP array | SNP genotyping analysis | 17 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1546191 | Remapped | Perfect | NC_000011.10:g.(38 242456_38243164)_( 38304833_38318734) del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 38,242,456 | 38,243,164 | 38,304,833 | 38,318,734 |
| nssv1567030 | Remapped | Perfect | NC_000011.10:g.(38 242456_38243164)_( 38304833_38318734) del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 38,242,456 | 38,243,164 | 38,304,833 | 38,318,734 |
| nssv1568962 | Remapped | Perfect | NC_000011.10:g.(38 242456_38243164)_( 38304833_38318734) del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 38,242,456 | 38,243,164 | 38,304,833 | 38,318,734 |
| nssv1574072 | Remapped | Perfect | NC_000011.10:g.(38 242456_38243164)_( 38304833_38318734) del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 38,242,456 | 38,243,164 | 38,304,833 | 38,318,734 |
| nssv1575872 | Remapped | Perfect | NC_000011.10:g.(38 242456_38243164)_( 38304833_38318734) del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 38,242,456 | 38,243,164 | 38,304,833 | 38,318,734 |
| nssv1578276 | Remapped | Perfect | NC_000011.10:g.(38 242456_38243164)_( 38304833_38318734) dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 38,242,456 | 38,243,164 | 38,304,833 | 38,318,734 |
| nssv1584244 | Remapped | Perfect | NC_000011.10:g.(38 242456_38243164)_( 38304833_38318734) dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 38,242,456 | 38,243,164 | 38,304,833 | 38,318,734 |
| nssv1546191 | Remapped | Perfect | NC_000011.9:g.(382 64006_38264714)_(3 8326383_38340284)d el | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 38,264,006 | 38,264,714 | 38,326,383 | 38,340,284 |
| nssv1567030 | Remapped | Perfect | NC_000011.9:g.(382 64006_38264714)_(3 8326383_38340284)d el | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 38,264,006 | 38,264,714 | 38,326,383 | 38,340,284 |
| nssv1568962 | Remapped | Perfect | NC_000011.9:g.(382 64006_38264714)_(3 8326383_38340284)d el | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 38,264,006 | 38,264,714 | 38,326,383 | 38,340,284 |
| nssv1574072 | Remapped | Perfect | NC_000011.9:g.(382 64006_38264714)_(3 8326383_38340284)d el | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 38,264,006 | 38,264,714 | 38,326,383 | 38,340,284 |
| nssv1575872 | Remapped | Perfect | NC_000011.9:g.(382 64006_38264714)_(3 8326383_38340284)d el | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 38,264,006 | 38,264,714 | 38,326,383 | 38,340,284 |
| nssv1578276 | Remapped | Perfect | NC_000011.9:g.(382 64006_38264714)_(3 8326383_38340284)d up | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 38,264,006 | 38,264,714 | 38,326,383 | 38,340,284 |
| nssv1584244 | Remapped | Perfect | NC_000011.9:g.(382 64006_38264714)_(3 8326383_38340284)d up | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 38,264,006 | 38,264,714 | 38,326,383 | 38,340,284 |
| nssv1546191 | Submitted genomic | NC_000011.8:g.(382 20582_38221290)_(3 8282959_38296860)d el | NCBI36 (hg18) | NC_000011.8 | Chr11 | 38,220,582 | 38,221,290 | 38,282,959 | 38,296,860 | ||
| nssv1567030 | Submitted genomic | NC_000011.8:g.(382 20582_38221290)_(3 8282959_38296860)d el | NCBI36 (hg18) | NC_000011.8 | Chr11 | 38,220,582 | 38,221,290 | 38,282,959 | 38,296,860 | ||
| nssv1568962 | Submitted genomic | NC_000011.8:g.(382 20582_38221290)_(3 8282959_38296860)d el | NCBI36 (hg18) | NC_000011.8 | Chr11 | 38,220,582 | 38,221,290 | 38,282,959 | 38,296,860 | ||
| nssv1574072 | Submitted genomic | NC_000011.8:g.(382 20582_38221290)_(3 8282959_38296860)d el | NCBI36 (hg18) | NC_000011.8 | Chr11 | 38,220,582 | 38,221,290 | 38,282,959 | 38,296,860 | ||
| nssv1575872 | Submitted genomic | NC_000011.8:g.(382 20582_38221290)_(3 8282959_38296860)d el | NCBI36 (hg18) | NC_000011.8 | Chr11 | 38,220,582 | 38,221,290 | 38,282,959 | 38,296,860 | ||
| nssv1578276 | Submitted genomic | NC_000011.8:g.(382 20582_38221290)_(3 8282959_38296860)d up | NCBI36 (hg18) | NC_000011.8 | Chr11 | 38,220,582 | 38,221,290 | 38,282,959 | 38,296,860 | ||
| nssv1584244 | Submitted genomic | NC_000011.8:g.(382 20582_38221290)_(3 8282959_38296860)d up | NCBI36 (hg18) | NC_000011.8 | Chr11 | 38,220,582 | 38,221,290 | 38,282,959 | 38,296,860 |