nsv897658
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:86,816
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 240 SVs from 46 studies. See in: genome view
Overlapping variant regions from other studies: 240 SVs from 46 studies. See in: genome view
Overlapping variant regions from other studies: 87 SVs from 16 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv897658 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000011.10 | Chr11 | 64,043,472 | 64,055,468 | 64,122,277 | 64,130,287 |
| nsv897658 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000011.9 | Chr11 | 63,810,944 | 63,822,940 | 63,889,749 | 63,897,759 |
| nsv897658 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000011.8 | Chr11 | 63,567,520 | 63,579,516 | 63,646,325 | 63,654,335 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1522711 | copy number gain | SP53399 | SNP array | SNP genotyping analysis | 13 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1522711 | Remapped | Perfect | NC_000011.10:g.(64 043472_64055468)_( 64122277_64130287) dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 64,043,472 | 64,055,468 | 64,122,277 | 64,130,287 |
| nssv1522711 | Remapped | Perfect | NC_000011.9:g.(638 10944_63822940)_(6 3889749_63897759)d up | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 63,810,944 | 63,822,940 | 63,889,749 | 63,897,759 |
| nssv1522711 | Submitted genomic | NC_000011.8:g.(635 67520_63579516)_(6 3646325_63654335)d up | NCBI36 (hg18) | NC_000011.8 | Chr11 | 63,567,520 | 63,579,516 | 63,646,325 | 63,654,335 |