nsv897947
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:45,316
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 254 SVs from 48 studies. See in: genome view
Overlapping variant regions from other studies: 254 SVs from 48 studies. See in: genome view
Overlapping variant regions from other studies: 53 SVs from 15 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv897947 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000011.10 | Chr11 | 79,102,993 | 79,106,052 | 79,146,447 | 79,148,308 |
| nsv897947 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000011.9 | Chr11 | 78,814,038 | 78,817,097 | 78,857,492 | 78,859,353 |
| nsv897947 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000011.8 | Chr11 | 78,491,686 | 78,494,745 | 78,535,140 | 78,537,001 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1529855 | copy number loss | MS10123 | SNP array | SNP genotyping analysis | 152 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1529855 | Remapped | Perfect | NC_000011.10:g.(79 102993_79106052)_( 79146447_79148308) del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 79,102,993 | 79,106,052 | 79,146,447 | 79,148,308 |
| nssv1529855 | Remapped | Perfect | NC_000011.9:g.(788 14038_78817097)_(7 8857492_78859353)d el | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 78,814,038 | 78,817,097 | 78,857,492 | 78,859,353 |
| nssv1529855 | Submitted genomic | NC_000011.8:g.(784 91686_78494745)_(7 8535140_78537001)d el | NCBI36 (hg18) | NC_000011.8 | Chr11 | 78,491,686 | 78,494,745 | 78,535,140 | 78,537,001 |