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dbVar

Database of genomic structural variation

nsv898000

Organism: Homo sapiens

Study:nstd71 (Xu et al. 2011)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:89,764

Publication(s):Xu et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 824 SVs from 84 studies. See in: genome view

Remapped(Score: Perfect):81,806,219-81,895,982

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv898000	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000011.10	Chr11	81,806,219	81,812,830	81,890,250	81,895,982
nsv898000	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000011.9	Chr11	81,517,261	81,523,872	81,601,292	81,607,024
nsv898000	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000011.8	Chr11	81,194,909	81,201,520	81,278,940	81,284,672

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1555209	copy number gain	MS21236	SNP array	SNP genotyping analysis	11
nssv1600638	copy number gain	IS41906	SNP array	SNP genotyping analysis	21

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1555209	Remapped	Perfect	NC_000011.10:g.(81 806219_81812830)_( 81890250_81895982) dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	81,806,219	81,812,830	81,890,250	81,895,982
nssv1600638	Remapped	Perfect	NC_000011.10:g.(81 806219_81812830)_( 81890250_81895982) dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	81,806,219	81,812,830	81,890,250	81,895,982
nssv1555209	Remapped	Perfect	NC_000011.9:g.(815 17261_81523872)_(8 1601292_81607024)d up	GRCh37.p13	First Pass	NC_000011.9	Chr11	81,517,261	81,523,872	81,601,292	81,607,024
nssv1600638	Remapped	Perfect	NC_000011.9:g.(815 17261_81523872)_(8 1601292_81607024)d up	GRCh37.p13	First Pass	NC_000011.9	Chr11	81,517,261	81,523,872	81,601,292	81,607,024
nssv1555209	Submitted genomic		NC_000011.8:g.(811 94909_81201520)_(8 1278940_81284672)d up	NCBI36 (hg18)		NC_000011.8	Chr11	81,194,909	81,201,520	81,278,940	81,284,672
nssv1600638	Submitted genomic		NC_000011.8:g.(811 94909_81201520)_(8 1278940_81284672)d up	NCBI36 (hg18)		NC_000011.8	Chr11	81,194,909	81,201,520	81,278,940	81,284,672

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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