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dbVar

Database of genomic structural variation

nsv898089

Organism: Homo sapiens

Study:nstd71 (Xu et al. 2011)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:3
Validation:Not tested
Clinical Assertions: No
Region Size:43,113

Publication(s):Xu et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 241 SVs from 40 studies. See in: genome view

Remapped(Score: Perfect):89,476,817-89,519,929

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv898089	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000011.10	Chr11	89,476,817	89,484,540	89,510,636	89,519,929
nsv898089	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000011.9	Chr11	89,209,985	89,217,708	89,243,804	89,253,097
nsv898089	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000011.8	Chr11	88,849,633	88,857,356	88,883,452	88,892,745

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1537303	copy number loss	MS13154	SNP array	SNP genotyping analysis	35
nssv1583068	copy number loss	IS36244	SNP array	SNP genotyping analysis	54
nssv1594988	copy number loss	IS40067	SNP array	SNP genotyping analysis	96

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1537303	Remapped	Perfect	NC_000011.10:g.(89 476817_89484540)_( 89510636_89519929) del	GRCh38.p12	First Pass	NC_000011.10	Chr11	89,476,817	89,484,540	89,510,636	89,519,929
nssv1583068	Remapped	Perfect	NC_000011.10:g.(89 476817_89484540)_( 89510636_89519929) del	GRCh38.p12	First Pass	NC_000011.10	Chr11	89,476,817	89,484,540	89,510,636	89,519,929
nssv1594988	Remapped	Perfect	NC_000011.10:g.(89 476817_89484540)_( 89510636_89519929) del	GRCh38.p12	First Pass	NC_000011.10	Chr11	89,476,817	89,484,540	89,510,636	89,519,929
nssv1537303	Remapped	Perfect	NC_000011.9:g.(892 09985_89217708)_(8 9243804_89253097)d el	GRCh37.p13	First Pass	NC_000011.9	Chr11	89,209,985	89,217,708	89,243,804	89,253,097
nssv1583068	Remapped	Perfect	NC_000011.9:g.(892 09985_89217708)_(8 9243804_89253097)d el	GRCh37.p13	First Pass	NC_000011.9	Chr11	89,209,985	89,217,708	89,243,804	89,253,097
nssv1594988	Remapped	Perfect	NC_000011.9:g.(892 09985_89217708)_(8 9243804_89253097)d el	GRCh37.p13	First Pass	NC_000011.9	Chr11	89,209,985	89,217,708	89,243,804	89,253,097
nssv1537303	Submitted genomic		NC_000011.8:g.(888 49633_88857356)_(8 8883452_88892745)d el	NCBI36 (hg18)		NC_000011.8	Chr11	88,849,633	88,857,356	88,883,452	88,892,745
nssv1583068	Submitted genomic		NC_000011.8:g.(888 49633_88857356)_(8 8883452_88892745)d el	NCBI36 (hg18)		NC_000011.8	Chr11	88,849,633	88,857,356	88,883,452	88,892,745
nssv1594988	Submitted genomic		NC_000011.8:g.(888 49633_88857356)_(8 8883452_88892745)d el	NCBI36 (hg18)		NC_000011.8	Chr11	88,849,633	88,857,356	88,883,452	88,892,745

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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