nsv898113
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:6
- Validation:Not tested
- Clinical Assertions: No
- Region Size:68,331
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 494 SVs from 71 studies. See in: genome view
Overlapping variant regions from other studies: 494 SVs from 71 studies. See in: genome view
Overlapping variant regions from other studies: 108 SVs from 23 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv898113 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000011.10 | Chr11 | 89,859,723 | 89,878,619 | 89,923,313 | 89,928,053 |
| nsv898113 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000011.9 | Chr11 | 89,592,891 | 89,611,787 | 89,656,481 | 89,661,221 |
| nsv898113 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000011.8 | Chr11 | 89,232,539 | 89,251,435 | 89,296,129 | 89,300,869 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1554849 | copy number loss | MS21036 | SNP array | SNP genotyping analysis | 15 |
| nssv1556955 | copy number loss | MS22297 | SNP array | SNP genotyping analysis | 13 |
| nssv1559839 | copy number loss | MS24173 | SNP array | SNP genotyping analysis | 8 |
| nssv1559932 | copy number loss | MS24223 | SNP array | SNP genotyping analysis | 14 |
| nssv1581614 | copy number loss | IS35670 | SNP array | SNP genotyping analysis | 12 |
| nssv1590881 | copy number loss | IS38600 | SNP array | SNP genotyping analysis | 10 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1554849 | Remapped | Perfect | NC_000011.10:g.(89 859723_89878619)_( 89923313_89928053) del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 89,859,723 | 89,878,619 | 89,923,313 | 89,928,053 |
| nssv1556955 | Remapped | Perfect | NC_000011.10:g.(89 859723_89878619)_( 89923313_89928053) del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 89,859,723 | 89,878,619 | 89,923,313 | 89,928,053 |
| nssv1559839 | Remapped | Perfect | NC_000011.10:g.(89 859723_89878619)_( 89923313_89928053) del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 89,859,723 | 89,878,619 | 89,923,313 | 89,928,053 |
| nssv1559932 | Remapped | Perfect | NC_000011.10:g.(89 859723_89878619)_( 89923313_89928053) del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 89,859,723 | 89,878,619 | 89,923,313 | 89,928,053 |
| nssv1581614 | Remapped | Perfect | NC_000011.10:g.(89 859723_89878619)_( 89923313_89928053) del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 89,859,723 | 89,878,619 | 89,923,313 | 89,928,053 |
| nssv1590881 | Remapped | Perfect | NC_000011.10:g.(89 859723_89878619)_( 89923313_89928053) del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 89,859,723 | 89,878,619 | 89,923,313 | 89,928,053 |
| nssv1554849 | Remapped | Perfect | NC_000011.9:g.(895 92891_89611787)_(8 9656481_89661221)d el | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 89,592,891 | 89,611,787 | 89,656,481 | 89,661,221 |
| nssv1556955 | Remapped | Perfect | NC_000011.9:g.(895 92891_89611787)_(8 9656481_89661221)d el | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 89,592,891 | 89,611,787 | 89,656,481 | 89,661,221 |
| nssv1559839 | Remapped | Perfect | NC_000011.9:g.(895 92891_89611787)_(8 9656481_89661221)d el | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 89,592,891 | 89,611,787 | 89,656,481 | 89,661,221 |
| nssv1559932 | Remapped | Perfect | NC_000011.9:g.(895 92891_89611787)_(8 9656481_89661221)d el | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 89,592,891 | 89,611,787 | 89,656,481 | 89,661,221 |
| nssv1581614 | Remapped | Perfect | NC_000011.9:g.(895 92891_89611787)_(8 9656481_89661221)d el | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 89,592,891 | 89,611,787 | 89,656,481 | 89,661,221 |
| nssv1590881 | Remapped | Perfect | NC_000011.9:g.(895 92891_89611787)_(8 9656481_89661221)d el | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 89,592,891 | 89,611,787 | 89,656,481 | 89,661,221 |
| nssv1554849 | Submitted genomic | NC_000011.8:g.(892 32539_89251435)_(8 9296129_89300869)d el | NCBI36 (hg18) | NC_000011.8 | Chr11 | 89,232,539 | 89,251,435 | 89,296,129 | 89,300,869 | ||
| nssv1556955 | Submitted genomic | NC_000011.8:g.(892 32539_89251435)_(8 9296129_89300869)d el | NCBI36 (hg18) | NC_000011.8 | Chr11 | 89,232,539 | 89,251,435 | 89,296,129 | 89,300,869 | ||
| nssv1559839 | Submitted genomic | NC_000011.8:g.(892 32539_89251435)_(8 9296129_89300869)d el | NCBI36 (hg18) | NC_000011.8 | Chr11 | 89,232,539 | 89,251,435 | 89,296,129 | 89,300,869 | ||
| nssv1559932 | Submitted genomic | NC_000011.8:g.(892 32539_89251435)_(8 9296129_89300869)d el | NCBI36 (hg18) | NC_000011.8 | Chr11 | 89,232,539 | 89,251,435 | 89,296,129 | 89,300,869 | ||
| nssv1581614 | Submitted genomic | NC_000011.8:g.(892 32539_89251435)_(8 9296129_89300869)d el | NCBI36 (hg18) | NC_000011.8 | Chr11 | 89,232,539 | 89,251,435 | 89,296,129 | 89,300,869 | ||
| nssv1590881 | Submitted genomic | NC_000011.8:g.(892 32539_89251435)_(8 9296129_89300869)d el | NCBI36 (hg18) | NC_000011.8 | Chr11 | 89,232,539 | 89,251,435 | 89,296,129 | 89,300,869 |